Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relB-yefM/YoeB-RelB |
| Location | 1889053..1889569 | Replicon | chromosome |
| Accession | NZ_CP047995 | ||
| Organism | Vibrio parahaemolyticus strain 20150710009 | ||
Toxin (Protein)
| Gene name | relB | Uniprot ID | U2ZZV8 |
| Locus tag | GSS20_RS08545 | Protein ID | WP_005464459.1 |
| Coordinates | 1889053..1889322 (-) | Length | 90 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | A0A7W4CB60 |
| Locus tag | GSS20_RS08550 | Protein ID | WP_005483180.1 |
| Coordinates | 1889315..1889569 (-) | Length | 85 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSS20_RS08520 (GSS20_09000) | 1885127..1885560 | - | 434 | Protein_1648 | GNAT family N-acetyltransferase | - |
| GSS20_RS08525 (GSS20_09005) | 1885739..1886149 | - | 411 | WP_024701711.1 | hypothetical protein | - |
| GSS20_RS08530 (GSS20_09010) | 1886230..1887120 | - | 891 | WP_005485669.1 | hypothetical protein | - |
| GSS20_RS08535 (GSS20_09020) | 1887731..1888531 | - | 801 | WP_086482363.1 | IS3 family transposase | - |
| GSS20_RS08540 (GSS20_09025) | 1888528..1888836 | - | 309 | WP_005464425.1 | transposase | - |
| GSS20_RS08545 (GSS20_09030) | 1889053..1889322 | - | 270 | WP_005464459.1 | Txe/YoeB family addiction module toxin | Toxin |
| GSS20_RS08550 (GSS20_09035) | 1889315..1889569 | - | 255 | WP_005483180.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
| GSS20_RS08555 (GSS20_09040) | 1889793..1890059 | - | 267 | WP_005464625.1 | hypothetical protein | - |
| GSS20_RS08560 (GSS20_09045) | 1890347..1890502 | - | 156 | Protein_1656 | SDR family oxidoreductase | - |
| GSS20_RS08565 (GSS20_09050) | 1890569..1891719 | + | 1151 | WP_102978303.1 | IS3 family transposase | - |
| GSS20_RS08570 | 1891732..1892040 | - | 309 | WP_025630903.1 | hypothetical protein | - |
| GSS20_RS08575 (GSS20_09060) | 1892425..1892517 | - | 93 | WP_078532240.1 | DUF3265 domain-containing protein | - |
| GSS20_RS08580 (GSS20_09065) | 1892540..1892956 | - | 417 | WP_025507116.1 | hypothetical protein | - |
| GSS20_RS08585 (GSS20_09070) | 1893093..1893581 | - | 489 | WP_031846174.1 | hypothetical protein | - |
| GSS20_RS08590 (GSS20_09075) | 1893710..1894492 | - | 783 | WP_198421245.1 | restriction endonuclease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1882254..1972857 | 90603 | |
| - | inside | Integron | - | - | 1885594..1917761 | 32167 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 a.a. Molecular weight: 10614.96 Da Isoelectric Point: 7.9816
>T148641 WP_005464459.1 NZ_CP047995:c1889322-1889053 [Vibrio parahaemolyticus]
MSSSQRLLSWTDDAWDDYLYWQTQDKKTLKRINKLINDVKRSPFEGIGKPEPLKENLSGFWSRRIDDTNRLVYAVDDQAI
TIISCRYHY
MSSSQRLLSWTDDAWDDYLYWQTQDKKTLKRINKLINDVKRSPFEGIGKPEPLKENLSGFWSRRIDDTNRLVYAVDDQAI
TIISCRYHY
Download Length: 270 bp
>T148641 NZ_CP063812:c3518973-3518545 [Microbacterium sp. NY27]
GTGACGCGGCACCTGCTCGACATCAACGCCGTCATCGCGCTCATCGATCCGCTGCACGTCAACCACGACCGGGCCCACCG
GTGGTTCGCGTCGCGGGGCGGGGCGATCTGGCACACCAGCCCCACCGTGCAGAACGGCGTCGTGCGCGTGGTCAGCCACC
CCAAGTACCCGAACAGCCAGCCGGCCCCGGTGGTGCTCGCGAGCCTGGCGAGCCTGTCGGCCCGCGAGGACCACGCGTTC
CTCGCCGACTCGGTGAGCCTCCTCGACAGCTCGGTCCACACCGAGCGCCTGCTCGCGAGCTCTCAGGTGACCGATACGTA
CCTCCTCCATCTCGCCGCGTCGAACGACGCGATGCTCGCGACCTTCGACACGCGCATCGTGACCTCGGTGGTGCCGTCGG
GGGCGACGGTGGTCTTCGCGATCCCGTAG
GTGACGCGGCACCTGCTCGACATCAACGCCGTCATCGCGCTCATCGATCCGCTGCACGTCAACCACGACCGGGCCCACCG
GTGGTTCGCGTCGCGGGGCGGGGCGATCTGGCACACCAGCCCCACCGTGCAGAACGGCGTCGTGCGCGTGGTCAGCCACC
CCAAGTACCCGAACAGCCAGCCGGCCCCGGTGGTGCTCGCGAGCCTGGCGAGCCTGTCGGCCCGCGAGGACCACGCGTTC
CTCGCCGACTCGGTGAGCCTCCTCGACAGCTCGGTCCACACCGAGCGCCTGCTCGCGAGCTCTCAGGTGACCGATACGTA
CCTCCTCCATCTCGCCGCGTCGAACGACGCGATGCTCGCGACCTTCGACACGCGCATCGTGACCTCGGTGGTGCCGTCGG
GGGCGACGGTGGTCTTCGCGATCCCGTAG
Antitoxin
Download Length: 85 a.a. Molecular weight: 9481.66 Da Isoelectric Point: 5.0623
>AT148641 WP_005483180.1 NZ_CP047995:c1889569-1889315 [Vibrio parahaemolyticus]
MRIVSFTEARNGLKAVLDGVVNDADTTVITRRDSEDAVVMSLDYYNSLMETVHLLRSPQNVEHLNRSIAQYRAGKTTARE
LIDE
MRIVSFTEARNGLKAVLDGVVNDADTTVITRRDSEDAVVMSLDYYNSLMETVHLLRSPQNVEHLNRSIAQYRAGKTTARE
LIDE
Download Length: 255 bp
>AT148641 NZ_CP063812:c3519197-3518970 [Microbacterium sp. NY27]
ATGCGCACGACGGTGACCATCGACGACGACGTCCTCGCGGCGGCGAAGCAGTTCGCCGACGCCCGCGGCCTGACCCTCGG
CGAGGCGCTGTCGCAGCTCGCGCGGGCCACCCTCACCGAGCGCCGCCGCTATGGCGGCACGCGCAACGGCATCGTGCTGC
TGCCGGCTCCCGCCACCGCGGCCAGCGGCGAGATCGAGGACGTCAACGCCCTCCGGGACGAGCCGTGA
ATGCGCACGACGGTGACCATCGACGACGACGTCCTCGCGGCGGCGAAGCAGTTCGCCGACGCCCGCGGCCTGACCCTCGG
CGAGGCGCTGTCGCAGCTCGCGCGGGCCACCCTCACCGAGCGCCGCCGCTATGGCGGCACGCGCAACGGCATCGTGCTGC
TGCCGGCTCCCGCCACCGCGGCCAGCGGCGAGATCGAGGACGTCAACGCCCTCCGGGACGAGCCGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | U2ZZV8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7W4CB60 |