Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-YefM |
| Location | 1596472..1597017 | Replicon | chromosome |
| Accession | NZ_CP047985 | ||
| Organism | Vibrio parahaemolyticus strain HZ-52 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | GSS61_RS07400 | Protein ID | WP_062851952.1 |
| Coordinates | 1596721..1597017 (+) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | - |
| Locus tag | GSS61_RS07395 | Protein ID | WP_023585842.1 |
| Coordinates | 1596472..1596714 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSS61_RS07335 (GSS61_07695) | 1591605..1592021 | - | 417 | WP_267431869.1 | hypothetical protein | - |
| GSS61_RS07340 (GSS61_07700) | 1592057..1592167 | - | 111 | WP_082798391.1 | DUF3265 domain-containing protein | - |
| GSS61_RS07345 (GSS61_07705) | 1592175..1592459 | - | 285 | WP_021452995.1 | MazG nucleotide pyrophosphohydrolase domain-containing protein | - |
| GSS61_RS07350 (GSS61_07710) | 1592504..1592614 | - | 111 | WP_171842753.1 | DUF3265 domain-containing protein | - |
| GSS61_RS07355 (GSS61_07715) | 1592620..1592955 | - | 336 | WP_062851948.1 | hypothetical protein | - |
| GSS61_RS07360 (GSS61_07720) | 1593103..1593636 | - | 534 | WP_062851949.1 | hypothetical protein | - |
| GSS61_RS07365 (GSS61_07725) | 1593667..1593759 | - | 93 | WP_079765423.1 | DUF3265 domain-containing protein | - |
| GSS61_RS07370 (GSS61_07735) | 1594368..1594577 | - | 210 | WP_025506672.1 | DUF3955 domain-containing protein | - |
| GSS61_RS07375 (GSS61_07740) | 1594679..1594768 | - | 90 | WP_075111318.1 | DUF3265 domain-containing protein | - |
| GSS61_RS07380 (GSS61_07745) | 1594786..1595094 | - | 309 | WP_062851950.1 | hypothetical protein | - |
| GSS61_RS07385 | 1595139..1595282 | - | 144 | WP_170926155.1 | DUF3265 domain-containing protein | - |
| GSS61_RS07390 (GSS61_07755) | 1595798..1596238 | - | 441 | WP_062851951.1 | hypothetical protein | - |
| GSS61_RS07395 (GSS61_07765) | 1596472..1596714 | + | 243 | WP_023585842.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| GSS61_RS07400 (GSS61_07770) | 1596721..1597017 | + | 297 | WP_062851952.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| GSS61_RS07405 (GSS61_07775) | 1597188..1597619 | - | 432 | WP_062851953.1 | NUDIX domain-containing protein | - |
| GSS61_RS07410 (GSS61_07780) | 1597779..1598417 | - | 639 | WP_062851954.1 | class I SAM-dependent methyltransferase | - |
| GSS61_RS07415 (GSS61_07785) | 1598545..1599171 | - | 627 | WP_062851955.1 | hypothetical protein | - |
| GSS61_RS07420 | 1599361..1599582 | - | 222 | WP_273692979.1 | hypothetical protein | - |
| GSS61_RS07425 (GSS61_07790) | 1599698..1599787 | - | 90 | WP_241791503.1 | DUF3265 domain-containing protein | - |
| GSS61_RS07430 (GSS61_07800) | 1600238..1600327 | - | 90 | WP_071881309.1 | DUF3265 domain-containing protein | - |
| GSS61_RS07435 (GSS61_07805) | 1600358..1601086 | - | 729 | WP_062851956.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | - | 1572371..1602766 | 30395 | |
| - | flank | IS/Tn | - | - | 1601166..1602086 | 920 | |
| - | inside | Integron | - | - | 1568716..1618427 | 49711 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11335.99 Da Isoelectric Point: 9.3813
>T148635 WP_062851952.1 NZ_CP047985:1596721-1597017 [Vibrio parahaemolyticus]
MQKNKYKLSKLAQAHLLKIKNYTVNNFSEMQWRNYKDTLLTGFQMLADNPEVGRSCDDIYPNGFHFPVGKHTAYFTKEDG
FILVVAVLSQSQLPQNHL
MQKNKYKLSKLAQAHLLKIKNYTVNNFSEMQWRNYKDTLLTGFQMLADNPEVGRSCDDIYPNGFHFPVGKHTAYFTKEDG
FILVVAVLSQSQLPQNHL
Download Length: 297 bp
>T148635 NZ_CP063804:3124076-3124339 [Mycobacterium orygis]
GTGCCTTACACCGTGCGGTTCACCACAACCGCGCGTCGAGACCTCCACAAGCTGCCACCGCGAATCCTCGCGGCAGTGGT
CGAATTCGCGTTCGGCGATCTGTCGCGCGAGCCCCTGCGGGTGGGCAAGCCCCTTCGGCGCGAGTTGGCCGGCACGTTCA
GCGCGCGTCGCGGAACGTACCGCCTGCTGTACCGGATTGACGACGAGCACACAACGGTAGTGATCCTGCGCGTCGATCAC
CGCGCGGACATCTACCGCCGATAG
GTGCCTTACACCGTGCGGTTCACCACAACCGCGCGTCGAGACCTCCACAAGCTGCCACCGCGAATCCTCGCGGCAGTGGT
CGAATTCGCGTTCGGCGATCTGTCGCGCGAGCCCCTGCGGGTGGGCAAGCCCCTTCGGCGCGAGTTGGCCGGCACGTTCA
GCGCGCGTCGCGGAACGTACCGCCTGCTGTACCGGATTGACGACGAGCACACAACGGTAGTGATCCTGCGCGTCGATCAC
CGCGCGGACATCTACCGCCGATAG
Antitoxin
Download Length: 81 a.a. Molecular weight: 8917.15 Da Isoelectric Point: 5.1006
>AT148635 WP_023585842.1 NZ_CP047985:1596472-1596714 [Vibrio parahaemolyticus]
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDAVVVMSIKDYEELEAMKADYLKHCFESAKKDLAQGNVVDGEDFLSAL
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDAVVVMSIKDYEELEAMKADYLKHCFESAKKDLAQGNVVDGEDFLSAL
Download Length: 243 bp
>AT148635 NZ_CP063804:3123791-3124072 [Mycobacterium orygis]
ATGCGGATACTGCCGATTTCGACGATCAAGGGCAAGCTCAATGAGTTCGTCGACGCGGTCTCGTCGACACAGGACCAGAT
CACCATCACCAAGAACGGTGCACCCGCAGCCGTTCTGGTCGGCGCCGACGAGTGGGAATCGTTGCAGGAGACGCTGTACT
GGCTGGCGCAACCCGGAATCAGGGAGTCGATCGCTGAAGCCGACGCCGACATTGCCTCCGGCCGCACCTACGGCGAAGAC
GAGATCCGCGCCGAATTCGGCGTCCCGCGACGCCCCCACTGA
ATGCGGATACTGCCGATTTCGACGATCAAGGGCAAGCTCAATGAGTTCGTCGACGCGGTCTCGTCGACACAGGACCAGAT
CACCATCACCAAGAACGGTGCACCCGCAGCCGTTCTGGTCGGCGCCGACGAGTGGGAATCGTTGCAGGAGACGCTGTACT
GGCTGGCGCAACCCGGAATCAGGGAGTCGATCGCTGAAGCCGACGCCGACATTGCCTCCGGCCGCACCTACGGCGAAGAC
GAGATCCGCGCCGAATTCGGCGTCCCGCGACGCCCCCACTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|