Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PhoH-LOG/- |
Location | 1290500..1292830 | Replicon | chromosome |
Accession | NZ_CP047950 | ||
Organism | Synechococcus sp. A15-62 |
Toxin (Protein)
Gene name | PhoH | Uniprot ID | - |
Locus tag | SynA1562_RS07425 | Protein ID | WP_186493347.1 |
Coordinates | 1291442..1292830 (-) | Length | 463 a.a. |
Antitoxin (Protein)
Gene name | LOG | Uniprot ID | - |
Locus tag | SynA1562_RS07420 | Protein ID | WP_186493346.1 |
Coordinates | 1290500..1291399 (-) | Length | 300 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SynA1562_RS07370 | 1285519..1285719 | - | 201 | WP_186495352.1 | hypothetical protein | - |
SynA1562_RS07375 | 1285922..1286794 | - | 873 | WP_186493341.1 | phycobilisome rod-core linker polypeptide | - |
SynA1562_RS07380 | 1286995..1287228 | - | 234 | WP_186493342.1 | hypothetical protein | - |
SynA1562_RS07385 | 1287332..1288042 | - | 711 | WP_186495353.1 | response regulator transcription factor | - |
SynA1562_RS07390 | 1288068..1288253 | - | 186 | WP_186493343.1 | hypothetical protein | - |
SynA1562_RS07395 | 1288666..1288893 | + | 228 | WP_186493344.1 | hypothetical protein | - |
SynA1562_RS07400 | 1289444..1289614 | - | 171 | WP_186493345.1 | hypothetical protein | - |
SynA1562_RS07405 | 1289812..1289991 | + | 180 | WP_025362229.1 | hypothetical protein | - |
SynA1562_RS07410 | 1290034..1290210 | + | 177 | WP_006851728.1 | hypothetical protein | - |
SynA1562_RS07415 | 1290314..1290481 | + | 168 | WP_170951026.1 | hypothetical protein | - |
SynA1562_RS07420 | 1290500..1291399 | - | 900 | WP_186493346.1 | LOG family protein | Antitoxin |
SynA1562_RS07425 | 1291442..1292830 | - | 1389 | WP_186493347.1 | PhoH family protein | Toxin |
SynA1562_RS07430 | 1293044..1293223 | - | 180 | WP_186493348.1 | hypothetical protein | - |
SynA1562_RS07435 | 1293755..1294066 | + | 312 | WP_186495354.1 | hypothetical protein | - |
SynA1562_RS07440 | 1294525..1294701 | + | 177 | WP_186493349.1 | hypothetical protein | - |
SynA1562_RS07445 | 1295378..1295638 | + | 261 | WP_186493350.1 | hypothetical protein | - |
SynA1562_RS07450 | 1295911..1296084 | + | 174 | WP_186495450.1 | hypothetical protein | - |
SynA1562_RS07455 | 1296099..1296287 | - | 189 | WP_186493351.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 463 a.a. Molecular weight: 50921.91 Da Isoelectric Point: 5.6950
>T148578 WP_186493347.1 NZ_CP047950:c1292830-1291442 [Synechococcus sp. A15-62]
MKDKIVVLDTNVLLHDPEAPHRFGDLRVVIPMQVVEEIDRFKKDHSEKGRNARRISRLLDSYRARGSLADGVPIEGTNHG
MLQVIFCQAQALQDLPAELQGGGGDNNILAVALEQMRCSGLKQAPEVVLISKDINLRIKADAVGLQAEDYVNDNVSIDDL
YAGFRELSTDAETIQTLHDEDQLPLEAVADREGQHLQANEAVVLVDQHNDSHTLLGRHQGNSNIIKPLHWLNRAHLGRIK
ARNREQSFALDLLLDPSVALVTLVGKAGTGKTLLAIAAGLHQVADTHHYARLLVTRPPISLGKDIGYLPGTLEEKLGPWM
KPIIDNIDFITGSSPGEEAEQTKKQRHREPRNAWADLQGMGLLEVEAINTIRGRSIPHQFLVVDEAQNLTPLEVKTIVTR
VGEGTKVVFTGDPYQIDNPYVDAESNGLTWLVEKLKGQPLVGHMTLTKGERSELAELAANIL
MKDKIVVLDTNVLLHDPEAPHRFGDLRVVIPMQVVEEIDRFKKDHSEKGRNARRISRLLDSYRARGSLADGVPIEGTNHG
MLQVIFCQAQALQDLPAELQGGGGDNNILAVALEQMRCSGLKQAPEVVLISKDINLRIKADAVGLQAEDYVNDNVSIDDL
YAGFRELSTDAETIQTLHDEDQLPLEAVADREGQHLQANEAVVLVDQHNDSHTLLGRHQGNSNIIKPLHWLNRAHLGRIK
ARNREQSFALDLLLDPSVALVTLVGKAGTGKTLLAIAAGLHQVADTHHYARLLVTRPPISLGKDIGYLPGTLEEKLGPWM
KPIIDNIDFITGSSPGEEAEQTKKQRHREPRNAWADLQGMGLLEVEAINTIRGRSIPHQFLVVDEAQNLTPLEVKTIVTR
VGEGTKVVFTGDPYQIDNPYVDAESNGLTWLVEKLKGQPLVGHMTLTKGERSELAELAANIL
Download Length: 1389 bp
>T148578 NZ_CP063780:c3963855-3963610 [Pseudomonas sp. OST1909]
ATCGGCGACCTGATTGATATCGTGACTTTTATCGCAGCAGAAAGCCCCGGCGCTGCACGACGCATCAAGACCCGCCTGGA
AGGCGCGCCTCTACCACTGGCTGAGCACCCCTGTCTATATCCGTGCGGCCGGGTGCCAGGTACTCGTGAGGTGGTTGTAC
ATCCCAATTATGTGCTGGTGTATAGAGTGACTGCCGAGCGGATCGAAATAGTCAACGTATTGCACGCCAGGCAAGAATAT
CCCTGA
ATCGGCGACCTGATTGATATCGTGACTTTTATCGCAGCAGAAAGCCCCGGCGCTGCACGACGCATCAAGACCCGCCTGGA
AGGCGCGCCTCTACCACTGGCTGAGCACCCCTGTCTATATCCGTGCGGCCGGGTGCCAGGTACTCGTGAGGTGGTTGTAC
ATCCCAATTATGTGCTGGTGTATAGAGTGACTGCCGAGCGGATCGAAATAGTCAACGTATTGCACGCCAGGCAAGAATAT
CCCTGA
Antitoxin
Download Length: 300 a.a. Molecular weight: 33173.53 Da Isoelectric Point: 5.3275
>AT148578 WP_186493346.1 NZ_CP047950:c1291399-1290500 [Synechococcus sp. A15-62]
MTVEHMTQFPNTASPEQANLDAILHSPTYRIAHEDQDLLNSNDMRGVRMLLEITKPDLHLETAGIESTIIVFGGARIVDN
DTAAAKLAQAEQRLSETPGSPVLKRHVVHAQQLVELSRFYDAAREFASLASRHGQANKGEIHGCSSHVIVTGGGPGIMEA
ANRGAFEAGCRSIGLNITLPFEQHPNPYITPDLCFKFNYFSLRKFHFVMRSIGAILFPGGFGTLDELFELLTLRQVGTKG
NMPIVLFGTEFWRRLVDFDYLAEMGLISDDDLDLIHFSDSAQEAWDFIRSRTQADPQAS
MTVEHMTQFPNTASPEQANLDAILHSPTYRIAHEDQDLLNSNDMRGVRMLLEITKPDLHLETAGIESTIIVFGGARIVDN
DTAAAKLAQAEQRLSETPGSPVLKRHVVHAQQLVELSRFYDAAREFASLASRHGQANKGEIHGCSSHVIVTGGGPGIMEA
ANRGAFEAGCRSIGLNITLPFEQHPNPYITPDLCFKFNYFSLRKFHFVMRSIGAILFPGGFGTLDELFELLTLRQVGTKG
NMPIVLFGTEFWRRLVDFDYLAEMGLISDDDLDLIHFSDSAQEAWDFIRSRTQADPQAS
Download Length: 900 bp
>AT148578 NZ_CP063780:c3964080-3963886 [Pseudomonas sp. OST1909]
ATGGGTGTTCAACTTTCCCCAATTGTTTCCGAGTTTGAAACCGAAGAGCAGGCGAGTAGTCATGATCTCTGGTTTCGTAA
AAAAGTCGAAAAAAGCTTGGCCAACCCCGGCCTCGGTGTACCTCATGACGAGGTCATGGCACGAGTTGAGGCGATTATTC
TGCAAGCAGAGCTTGAGCAGCGGGCCAAGGCTTGA
ATGGGTGTTCAACTTTCCCCAATTGTTTCCGAGTTTGAAACCGAAGAGCAGGCGAGTAGTCATGATCTCTGGTTTCGTAA
AAAAGTCGAAAAAAGCTTGGCCAACCCCGGCCTCGGTGTACCTCATGACGAGGTCATGGCACGAGTTGAGGCGATTATTC
TGCAAGCAGAGCTTGAGCAGCGGGCCAAGGCTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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