Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1994999..1995270 | Replicon | chromosome |
| Accession | NZ_CP047876 | ||
| Organism | Escherichia coli strain LD22-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995129..1995232 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1994999..1995270 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUU87_RS09530 | 1991554..1992216 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GUU87_RS09535 | 1992240..1992896 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| GUU87_RS09540 | 1992998..1993228 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GUU87_RS09545 | 1993367..1993741 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GUU87_RS09550 | 1993745..1994617 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| GUU87_RS09555 | 1994630..1994971 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1994999..1995270 | - | 272 | - | - | Antitoxin |
| - | 1995129..1995232 | + | 104 | - | - | Toxin |
| GUU87_RS09560 | 1995367..1996023 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GUU87_RS09565 | 1996024..1996215 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GUU87_RS09570 | 1996320..1996556 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GUU87_RS09575 | 1996674..1998113 | - | 1440 | WP_047629635.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T148461 NZ_CP047876:1995129-1995232 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT148461 NZ_CP047876:c1995270-1994999 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
