Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/Txe-RelB
Location 2202468..2202991 Replicon chromosome
Accession NZ_CP047802
Organism Staphylococcus aureus strain UP_1442

Toxin (Protein)


Gene name relE Uniprot ID A0A3A5LQI3
Locus tag E3S67_RS11245 Protein ID WP_000074049.1
Coordinates 2202468..2202734 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag E3S67_RS11250 Protein ID WP_000587616.1
Coordinates 2202734..2202991 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E3S67_RS11225 2197775..2198962 - 1188 WP_160200077.1 MFS transporter -
E3S67_RS11230 2199358..2200134 - 777 WP_000072149.1 iron export ABC transporter permease subunit FetB -
E3S67_RS11235 2200127..2200789 - 663 WP_000923526.1 ATP-binding cassette domain-containing protein -
E3S67_RS11240 2201037..2202113 - 1077 WP_001076673.1 M42 family metallopeptidase -
E3S67_RS11245 2202468..2202734 - 267 WP_000074049.1 Txe/YoeB family addiction module toxin Toxin
E3S67_RS11250 2202734..2202991 - 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
E3S67_RS11255 2203350..2203805 + 456 WP_000732076.1 DUF1307 domain-containing protein -
E3S67_RS11260 2203973..2205550 - 1578 WP_000143494.1 FMN-binding glutamate synthase family protein -
E3S67_RS11265 2205745..2206494 + 750 WP_000072461.1 CPBP family intramembrane metalloprotease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(4-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10676.24 Da        Isoelectric Point: 10.1597

>T147953 WP_000074049.1 NZ_CP047802:c2202734-2202468 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLRKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T147953 NZ_CP063380:3846016-3846219 [Pectobacterium versatile]
ATGAAAAAAATCGACTATTTGATGCGTTTGCGTAAATGCACAACCATTGACACTCTCGAACGCGTTATTGAAAAAAACAA
GTATGAACTCTCTAATGATGAACTGGAGATGTTCTTTTCCGCAGCCGATCATCGTCTGGCTGAACTGACAATGAACAAAC
TCTACGACAAAGTTCCTACCGCAGTATGGCGATACGTCCGTTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT147953 WP_000587616.1 NZ_CP047802:c2202991-2202734 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT147953 NZ_CP063380:3845594-3845962 [Pectobacterium versatile]
ATGGATGAGTACACACCAAAACATTATGATATTGCCCAACTCAGATTCTTATGTGAGAATCTATGTGACGAAAGCATAGC
AACGTTAGGTGATAGCAGTCACGGCTGGGTCAATGATCCAACATCTGCGATCAATCTCCAATTAAATGAACTTATTGAGC
ATATCGCTACGTTTATTCTCACATTTAAAATAAAATACCCTAACGAAAGTGAGCTTTCAGAGCAGGTTGAAAAGTATTTG
GATGATACTTACGTCTTGTTTAGCAACTATGGAATTAATGATGCTGAACTGCGGCGTTGGCAGAAGTCCAAAGCAAAATT
ATTCGGAATGTTCTCAGGGGAGAACGTCTGTACGCCTGCTAAAACTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3A5LQI3

Antitoxin

Source ID Structure
PDB 7V6W
PDB 7V5Z
PDB 7V5Y
AlphaFold DB W8TQT5

References