Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | tsbAT/- |
Location | 166745..167521 | Replicon | chromosome |
Accession | NZ_CP047801 | ||
Organism | Staphylococcus aureus strain UP_248 |
Toxin (Protein)
Gene name | tsbT | Uniprot ID | X5E2E6 |
Locus tag | E3S70_RS01100 | Protein ID | WP_000031108.1 |
Coordinates | 167369..167521 (+) | Length | 51 a.a. |
Antitoxin (Protein)
Gene name | tsbA | Uniprot ID | A0A0D1IYN8 |
Locus tag | E3S70_RS01095 | Protein ID | WP_001251219.1 |
Coordinates | 166745..167344 (+) | Length | 200 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
E3S70_RS01075 | 162661..164118 | + | 1458 | WP_000649898.1 | ABC transporter permease subunit | - |
E3S70_RS01080 | 164111..164833 | + | 723 | WP_000590809.1 | amino acid ABC transporter ATP-binding protein | - |
E3S70_RS01085 | 164984..166111 | + | 1128 | WP_201751497.1 | tRNA epoxyqueuosine(34) reductase QueG | - |
E3S70_RS01090 | 166116..166586 | + | 471 | WP_000181394.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
E3S70_RS01095 | 166745..167344 | + | 600 | WP_001251219.1 | glucosamine-6-phosphate isomerase | Antitoxin |
E3S70_RS01100 | 167369..167521 | + | 153 | WP_000031108.1 | hypothetical protein | Toxin |
E3S70_RS01105 | 168122..168517 | + | 396 | WP_000901019.1 | hypothetical protein | - |
E3S70_RS01110 | 168713..170098 | + | 1386 | WP_000116227.1 | class II fumarate hydratase | - |
E3S70_RS01115 | 170554..171375 | - | 822 | WP_000669380.1 | RluA family pseudouridine synthase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 51 a.a. Molecular weight: 5936.28 Da Isoelectric Point: 3.8962
>T147920 WP_000031108.1 NZ_CP047801:167369-167521 [Staphylococcus aureus]
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
Download Length: 153 bp
>T147920 NZ_CP063367:2410489-2410827 [Staphylococcus delphini]
ATGAGTATTAAACAATTTGACATCATTTACATTGATTTAAATCCAACTCGCGGTCGTGAAAAACAAAACATGAGACCTTT
TTTAGTGATCAATAACCAAATGATGATTGACGGCACTGAATTTGTTTGGGTTGTACCTATCACAAATCGTGAGTTGCGTT
ATCCGACCGATATAGAACTTAAAACCAAAAAAGGACTGGTATCTGGCGTGATAGATACGATTCAAATACGTGCTTTAGAC
TTAAACGCTCGCCAACATCACTATAAAGATGCATTACAAGACAATCTAAAAAGTAAAGTTTTAAAAGCAATACAAACATA
TTTAAATCCAAACTACTAA
ATGAGTATTAAACAATTTGACATCATTTACATTGATTTAAATCCAACTCGCGGTCGTGAAAAACAAAACATGAGACCTTT
TTTAGTGATCAATAACCAAATGATGATTGACGGCACTGAATTTGTTTGGGTTGTACCTATCACAAATCGTGAGTTGCGTT
ATCCGACCGATATAGAACTTAAAACCAAAAAAGGACTGGTATCTGGCGTGATAGATACGATTCAAATACGTGCTTTAGAC
TTAAACGCTCGCCAACATCACTATAAAGATGCATTACAAGACAATCTAAAAAGTAAAGTTTTAAAAGCAATACAAACATA
TTTAAATCCAAACTACTAA
Antitoxin
Download Length: 200 a.a. Molecular weight: 22357.50 Da Isoelectric Point: 5.1445
>AT147920 WP_001251219.1 NZ_CP047801:166745-167344 [Staphylococcus aureus]
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGV
PAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGK
TSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGV
PAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGK
TSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
Download Length: 600 bp
>AT147920 NZ_CP063367:2410223-2410492 [Staphylococcus delphini]
ATGACTCAAACATTTAACGATGTAAGTATATCGACCGAACGCATTTTTAAAAACGGAAATAGTCAAGCTATGAGTTTAAG
TAAAAAAATGATTCAATCCGTTGATTTTGAGATTGGCGATACAGTTGAAGTGCAAAAAATAAATGGTGGGCTGTTTATTA
CTAAAAAAGAAGTATCTATTGAAGATAGTATCAAAAACTTCTTCCAAAATGGTGGTAAGTATCAAGAATCAGAAGTAGAC
TTCGGCGAAAGTGTAGGTCGTGAAATATGA
ATGACTCAAACATTTAACGATGTAAGTATATCGACCGAACGCATTTTTAAAAACGGAAATAGTCAAGCTATGAGTTTAAG
TAAAAAAATGATTCAATCCGTTGATTTTGAGATTGGCGATACAGTTGAAGTGCAAAAAATAAATGGTGGGCTGTTTATTA
CTAAAAAAGAAGTATCTATTGAAGATAGTATCAAAAACTTCTTCCAAAATGGTGGTAAGTATCAAGAATCAGAAGTAGAC
TTCGGCGAAAGTGTAGGTCGTGAAATATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | X5E2E6 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0D1IYN8 |