147906

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/Txe-RelB
Location 2348047..2348570 Replicon chromosome
Accession NZ_CP047800
Organism Staphylococcus aureus strain UP_296

Toxin (Protein)


Gene name relE Uniprot ID A0A3A5LQI3
Locus tag E3S72_RS11635 Protein ID WP_000074049.1
Coordinates 2348304..2348570 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag E3S72_RS11630 Protein ID WP_000587616.1
Coordinates 2348047..2348304 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E3S72_RS11615 2344545..2345294 - 750 WP_000072461.1 CPBP family intramembrane metalloprotease -
E3S72_RS11620 2345489..2347066 + 1578 WP_000143494.1 FMN-binding glutamate synthase family protein -
E3S72_RS11625 2347234..2347689 - 456 WP_000732076.1 DUF1307 domain-containing protein -
E3S72_RS11630 2348047..2348304 + 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
E3S72_RS11635 2348304..2348570 + 267 WP_000074049.1 Txe/YoeB family addiction module toxin Toxin
E3S72_RS11640 2348925..2350001 + 1077 WP_001076673.1 M42 family metallopeptidase -
E3S72_RS11645 2350249..2350911 + 663 WP_000923526.1 ATP-binding cassette domain-containing protein -
E3S72_RS11650 2350904..2351680 + 777 WP_000072149.1 iron export ABC transporter permease subunit FetB -
E3S72_RS11655 2352076..2353263 + 1188 WP_000026189.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(4-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10676.24 Da        Isoelectric Point: 10.1597

>T147906 WP_000074049.1 NZ_CP047800:2348304-2348570 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLRKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T147906 NZ_CP063359:70494-70775 [Pseudomonas stutzeri]
ATGCGGACGATTGAACAGACCAGCCGGTTCAAGCGCGATTACAAACGCGAAGCCAAAGGCCCGCATCGTCAGACGCTGGC
GAGCGATTTCATTGCCGTCGTCACAGCCCTGGCGAATAACCAGCCTCTGGCCGAGAAGCACCGTGACCACGCCCTCGCCG
GCGACTGGAAAGACCACCGGGACTGTCACATCAAGCCCGACCTGGTGTTGATTTACCGCAAGGCGGATGACGCAGTGCTG
CAACTCGTGCGTCTCGGATCGCATAGCGAGCTTGGGCTGTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT147906 WP_000587616.1 NZ_CP047800:2348047-2348304 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT147906 NZ_CP063359:70244-70507 [Pseudomonas stutzeri]
ATGTCCGCAAATGCTGTAGTCCGTGCCCGTATCGACGAGAACATCAAGGAAGAGGCGACCGTCGTGCTGGCAGCGATGGG
ACTCACCGTGTCTGACGCCTTCCGCATCATGTTGACCCGAGTCGCCCGCGAGAAAGCCTTGCCGTTCGAGCCGCTGATTC
CGAACGCCACCACCATCGAGGCGATGAAGGAAGCGCGCCGTGGCGGCTTGAAGTCGTTCGCTTCCGTCGAGGATCTGATG
GCGGATCTGAATGCGGACGATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3A5LQI3

Antitoxin

Source ID Structure
AlphaFold DB W8TQT5

References