Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | TsdAT/- |
Location | 2226905..2227419 | Replicon | chromosome |
Accession | NZ_CP047796 | ||
Organism | Staphylococcus aureus strain UP_462 |
Toxin (Protein)
Gene name | TsdT | Uniprot ID | A0A7U7IDH9 |
Locus tag | E3S78_RS10675 | Protein ID | WP_000581791.1 |
Coordinates | 2227210..2227419 (+) | Length | 70 a.a. |
Antitoxin (Protein)
Gene name | TsdA | Uniprot ID | A0A0D1GBN9 |
Locus tag | E3S78_RS10670 | Protein ID | WP_000138934.1 |
Coordinates | 2226905..2227198 (+) | Length | 98 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
E3S78_RS10640 | 2222368..2223009 | + | 642 | WP_000483150.1 | thiamine phosphate synthase | - |
E3S78_RS10645 | 2223095..2223967 | + | 873 | WP_000725802.1 | membrane protein insertase YidC | - |
E3S78_RS10650 | 2224124..2224423 | - | 300 | WP_001793952.1 | hypothetical protein | - |
E3S78_RS10660 | 2224580..2225227 | - | 648 | WP_001187612.1 | HD domain-containing protein | - |
E3S78_RS10665 | 2225255..2226739 | - | 1485 | WP_000571560.1 | cardiolipin synthase | - |
E3S78_RS10670 | 2226905..2227198 | + | 294 | WP_000138934.1 | copper-sensing transcriptional repressor CsoR | Antitoxin |
E3S78_RS10675 | 2227210..2227419 | + | 210 | WP_000581791.1 | heavy-metal-associated domain-containing protein | Toxin |
E3S78_RS10680 | 2227547..2227684 | + | 138 | WP_000828354.1 | hypothetical protein | - |
E3S78_RS10685 | 2228096..2228779 | + | 684 | Protein_2092 | transposase | - |
E3S78_RS10690 | 2228940..2230142 | - | 1203 | WP_001109939.1 | rod shape-determining protein RodA | - |
E3S78_RS10695 | 2230460..2231530 | + | 1071 | WP_000159639.1 | D-alanine--D-alanine ligase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 70 a.a. Molecular weight: 7826.83 Da Isoelectric Point: 4.1008
>T147845 WP_000581791.1 NZ_CP047796:2227210-2227419 [Staphylococcus aureus]
MIHQNTIYTAGIETEEQVSQLTERISNMIGVHQVIINIIDGQVTVAYETPANLNSIEKEIYDEGYKIVF
MIHQNTIYTAGIETEEQVSQLTERISNMIGVHQVIINIIDGQVTVAYETPANLNSIEKEIYDEGYKIVF
Download Length: 210 bp
>T147845 NZ_CP063337:c36634-36218 [Escherichia coli]
GTGAAAAAGACTTTTATGCTCGACACAAACATCTGCTCGTTCATCATGCGCGAGCAGCCGGCAGCGGTGCTGAAGCGCCT
GGAGCAGGCGGTGCTGCGTGGCCACCGTATCGTGGTCTCGGCCATCACCTACTCCGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCCCCGCGCCATATCGAGCTGGTTGACGCGTTCTGTGCCCGCCTCGATGCCATCCTGCCCTGGGACCGAGCC
GCGGTGGATGCGACCACGGAGATTAAGGTGGCCTTGCGACAGGCCGGGACGCCGATTGGCCCGAACGACACGGCGATAGC
CGGGCACGCCATCGCGGCCGGCGCCGTTCTGGTGACGAATAATGTAAGAGAGTTTGCGCGGGTCCCGGGCCTGGTGCTGG
AAGACTGGGTGAATTAA
GTGAAAAAGACTTTTATGCTCGACACAAACATCTGCTCGTTCATCATGCGCGAGCAGCCGGCAGCGGTGCTGAAGCGCCT
GGAGCAGGCGGTGCTGCGTGGCCACCGTATCGTGGTCTCGGCCATCACCTACTCCGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCCCCGCGCCATATCGAGCTGGTTGACGCGTTCTGTGCCCGCCTCGATGCCATCCTGCCCTGGGACCGAGCC
GCGGTGGATGCGACCACGGAGATTAAGGTGGCCTTGCGACAGGCCGGGACGCCGATTGGCCCGAACGACACGGCGATAGC
CGGGCACGCCATCGCGGCCGGCGCCGTTCTGGTGACGAATAATGTAAGAGAGTTTGCGCGGGTCCCGGGCCTGGTGCTGG
AAGACTGGGTGAATTAA
Antitoxin
Download Length: 98 a.a. Molecular weight: 11185.77 Da Isoelectric Point: 6.2243
>AT147845 WP_000138934.1 NZ_CP047796:2226905-2227198 [Staphylococcus aureus]
MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVLTQIRATRSALNSVATKLLEQHMKSCIMNKVNQGAQ
EEAMEELLVTFQKLIKD
MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVLTQIRATRSALNSVATKLLEQHMKSCIMNKVNQGAQ
EEAMEELLVTFQKLIKD
Download Length: 294 bp
>AT147845 NZ_CP063337:c36861-36631 [Escherichia coli]
ATGCGCACAGTTTCGATATTTAAAAACGGCAATAACCGCGCCATCCGTCTGCCCCGTGACCTGGATTTTGACGGCGTCAG
CGAGCTGGAGATCGTCCGGGAAGGGGACAGCATCATTCTGCGTCCCGTCCGGCCGACCTGGGGCTCGTTCGCGCAGCTGG
ACAGGGCCGATCCGGACTTTATGGCGGAACGCGAGGATGTGGTCAGCGACGAAGGACGATTTGACCTGTGA
ATGCGCACAGTTTCGATATTTAAAAACGGCAATAACCGCGCCATCCGTCTGCCCCGTGACCTGGATTTTGACGGCGTCAG
CGAGCTGGAGATCGTCCGGGAAGGGGACAGCATCATTCTGCGTCCCGTCCGGCCGACCTGGGGCTCGTTCGCGCAGCTGG
ACAGGGCCGATCCGGACTTTATGGCGGAACGCGAGGATGTGGTCAGCGACGAAGGACGATTTGACCTGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7U7IDH9 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0D1GBN9 |