Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) TsdAT/-
Location 2653103..2653617 Replicon chromosome
Accession NZ_CP047790
Organism Staphylococcus aureus strain UP_830

Toxin (Protein)


Gene name TsdT Uniprot ID T1YA99
Locus tag E3S90_RS13035 Protein ID WP_000581792.1
Coordinates 2653408..2653617 (+) Length 70 a.a.

Antitoxin (Protein)


Gene name TsdA Uniprot ID W8UW13
Locus tag E3S90_RS13030 Protein ID WP_000138932.1
Coordinates 2653103..2653396 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E3S90_RS13010 2648707..2649348 + 642 WP_160195064.1 thiamine phosphate synthase -
E3S90_RS13015 2649434..2650306 + 873 WP_000725802.1 membrane protein insertase YidC -
E3S90_RS13020 2650778..2651425 - 648 WP_001187630.1 HD domain-containing protein -
E3S90_RS13025 2651453..2652937 - 1485 WP_000571549.1 cardiolipin synthase -
E3S90_RS13030 2653103..2653396 + 294 WP_000138932.1 copper-sensing transcriptional repressor CsoR Antitoxin
E3S90_RS13035 2653408..2653617 + 210 WP_000581792.1 heavy-metal-associated domain-containing protein Toxin
E3S90_RS13040 2653745..2653882 + 138 WP_000828354.1 hypothetical protein -
E3S90_RS13045 2654146..2655348 - 1203 WP_001109939.1 rod shape-determining protein RodA -
E3S90_RS13050 2655666..2656736 + 1071 WP_000159631.1 D-alanine--D-alanine ligase -
E3S90_RS13055 2656751..2658109 + 1359 WP_000611470.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Heavy metal-associated domain, HMA

(23-66)

Antitoxin

Metal-sensitive transcriptional repressor

(14-92)


Sequences

Toxin        


Download         Length: 70 a.a.        Molecular weight: 7843.77 Da        Isoelectric Point: 4.1008

>T147749 WP_000581792.1 NZ_CP047790:2653408-2653617 [Staphylococcus aureus]
MIHQNTIYTAGIETEEQVSQLTERISNMIGVHQVNINIIDGQVTVSYETPANLNSIEKEIYDEGYKIVF

Download         Length: 210 bp

>T147749 NZ_CP063238:c3945506-3945117 [Serratia marcescens]
ATGTACATGTTTGATACCAACACCGTCAGCCACTTGTTTCGGCAGCATCCGCAGGTGCTTAACGTCATGGAAAAGCTCCC
GCCTTCTGCCGTATGTATTTCCAGCGTCACGGAGGCGGAACTGCTTTACGGTGTGGCTAAACGGCGGAACAAGGCGTTGC
AAAGCATGGTCGAGGCCTTTCTTGCCGCGGTGACGGTCTATGCATGGGATAGCGAGGCCGCCCGCTGCTACGGTGAAATG
CGCGCGAACATGGAGAAAAAGGGCAAAATCATGGGCGCGCTGGATCAACTGATCGCCGCTCACGCGCAGAGCCGTGGCGC
GACGCTGGTGACCAACGATCGCGCATTCGCCATGGTGCCCGGGTTGGCGGTTGAAGACTGGACGCGCTGA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11197.82 Da        Isoelectric Point: 6.2243

>AT147749 WP_000138932.1 NZ_CP047790:2653103-2653396 [Staphylococcus aureus]
MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVLTQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQ
EEAMEELLVTFQKLIKD

Download         Length: 294 bp

>AT147749 NZ_CP063238:c3945773-3945510 [Serratia marcescens]
ATGGAAAGAATCGCAAAGCTGTTTAAAAACGGCAGAAATCAGGCGGTGAGGTTACCGGTGGAATTTGAATTTGATACGGA
TCGTGTCTATATCCGTCGCGATCGGGAGGGCAACGTGATTTTATCCAAATATCCGGCAAAGCCGGACAGCTGGGCACCGC
TGCTGAGCATTATCGCCCAAACGCCGGTGCCGCAAGAGTTTCTTGGCGCGGAAGATCGTCAGCAAGGGGTTGCAGACCGC
GATCCATTCTCAGAGGAAGAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6FF1

Antitoxin

Source ID Structure
AlphaFold DB W8UW13

References