Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2757502..2757711 | Replicon | chromosome |
| Accession | NZ_CP047740 | ||
| Organism | Enterobacter hormaechei strain Eho-4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2757515..2757618 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2757502..2757711 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI65_RS13185 | 2753770..2755218 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GVI65_RS13190 | 2755325..2755564 | + | 240 | WP_003859885.1 | YebV family protein | - |
| GVI65_RS13195 | 2755599..2756243 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| GVI65_RS13200 | 2756411..2757391 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| GVI65_RS13205 | 2757437..2757634 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2757502..2757711 | + | 210 | - | - | Antitoxin |
| - | 2757515..2757618 | - | 104 | - | - | Toxin |
| GVI65_RS13210 | 2757760..2758098 | - | 339 | WP_003859787.1 | YebY family protein | - |
| GVI65_RS13215 | 2758115..2758984 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| GVI65_RS13220 | 2758986..2759357 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| GVI65_RS13225 | 2759495..2759725 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GVI65_RS13230 | 2759837..2760487 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| GVI65_RS13235 | 2760512..2761174 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T147465 NZ_CP047740:c2757618-2757515 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT147465 NZ_CP047740:2757502-2757711 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
