Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2742911..2743120 | Replicon | chromosome |
| Accession | NZ_CP047736 | ||
| Organism | Enterobacter hormaechei strain Eho-5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2742924..2743027 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2742911..2743120 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI66_RS13115 | 2739179..2740627 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GVI66_RS13120 | 2740734..2740973 | + | 240 | WP_003859885.1 | YebV family protein | - |
| GVI66_RS13125 | 2741008..2741652 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| GVI66_RS13130 | 2741820..2742800 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| GVI66_RS13135 | 2742846..2743043 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2742911..2743120 | + | 210 | - | - | Antitoxin |
| - | 2742924..2743027 | - | 104 | - | - | Toxin |
| GVI66_RS13140 | 2743169..2743507 | - | 339 | WP_003859787.1 | YebY family protein | - |
| GVI66_RS13145 | 2743524..2744393 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| GVI66_RS13150 | 2744395..2744766 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| GVI66_RS13155 | 2744904..2745134 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GVI66_RS13160 | 2745246..2745896 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| GVI66_RS13165 | 2745921..2746583 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T147447 NZ_CP047736:c2743027-2742924 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT147447 NZ_CP047736:2742911-2743120 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
