Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2663362..2663563 | Replicon | chromosome |
| Accession | NZ_CP047729 | ||
| Organism | Enterobacter hormaechei strain Eho-6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2663367..2663470 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2663362..2663563 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI67_RS12730 | 2659623..2661071 | + | 1449 | WP_197347173.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GVI67_RS12735 | 2661177..2661416 | + | 240 | WP_006811010.1 | YebV family protein | - |
| GVI67_RS12740 | 2661451..2662095 | - | 645 | WP_032673898.1 | protein-serine/threonine phosphatase | - |
| GVI67_RS12745 | 2662263..2663243 | + | 981 | WP_039274015.1 | VirK/YbjX family protein | - |
| GVI67_RS12750 | 2663289..2663486 | + | 198 | WP_000460990.1 | hypothetical protein | - |
| - | 2663362..2663563 | + | 202 | - | - | Antitoxin |
| - | 2663367..2663470 | - | 104 | - | - | Toxin |
| GVI67_RS12755 | 2663612..2663950 | - | 339 | WP_006811013.1 | YebY family protein | - |
| GVI67_RS12760 | 2663968..2664837 | - | 870 | WP_006811014.1 | copper homeostasis membrane protein CopD | - |
| GVI67_RS12765 | 2664839..2665210 | - | 372 | WP_032673899.1 | CopC domain-containing protein YobA | - |
| GVI67_RS12770 | 2665348..2665578 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GVI67_RS12775 | 2665690..2666340 | + | 651 | WP_039274017.1 | carbon-nitrogen hydrolase family protein | - |
| GVI67_RS12780 | 2666365..2667027 | + | 663 | WP_006811017.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T147432 NZ_CP047729:c2663470-2663367 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT147432 NZ_CP047729:2663362-2663563 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
