Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2663329..2663530 | Replicon | chromosome |
| Accession | NZ_CP047715 | ||
| Organism | Enterobacter hormaechei strain Eho-E2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2663334..2663437 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2663329..2663530 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI74_RS12735 | 2659590..2661038 | + | 1449 | WP_197347173.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GVI74_RS12740 | 2661144..2661383 | + | 240 | WP_006811010.1 | YebV family protein | - |
| GVI74_RS12745 | 2661418..2662062 | - | 645 | WP_032673898.1 | protein-serine/threonine phosphatase | - |
| GVI74_RS12750 | 2662230..2663210 | + | 981 | WP_039274015.1 | VirK/YbjX family protein | - |
| GVI74_RS12755 | 2663256..2663453 | + | 198 | WP_000460990.1 | hypothetical protein | - |
| - | 2663329..2663530 | + | 202 | - | - | Antitoxin |
| - | 2663334..2663437 | - | 104 | - | - | Toxin |
| GVI74_RS12760 | 2663579..2663917 | - | 339 | WP_006811013.1 | YebY family protein | - |
| GVI74_RS12765 | 2663935..2664804 | - | 870 | WP_006811014.1 | copper homeostasis membrane protein CopD | - |
| GVI74_RS12770 | 2664806..2665177 | - | 372 | WP_032673899.1 | CopC domain-containing protein YobA | - |
| GVI74_RS12775 | 2665315..2665545 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GVI74_RS12780 | 2665657..2666307 | + | 651 | WP_039274017.1 | carbon-nitrogen hydrolase family protein | - |
| GVI74_RS12785 | 2666332..2666994 | + | 663 | WP_006811017.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T147415 NZ_CP047715:c2663437-2663334 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT147415 NZ_CP047715:2663329-2663530 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
