Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2088966..2089234 | Replicon | chromosome |
| Accession | NZ_CP047710 | ||
| Organism | Escherichia coli strain Eco-15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2089094..2089196 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2088966..2089234 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI77_RS09790 | 2085519..2086181 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GVI77_RS09795 | 2086205..2086861 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| GVI77_RS09800 | 2086963..2087193 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GVI77_RS09805 | 2087332..2087706 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GVI77_RS09810 | 2087710..2088582 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| GVI77_RS09815 | 2088595..2088936 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2088966..2089234 | - | 269 | - | - | Antitoxin |
| - | 2089094..2089196 | + | 103 | - | - | Toxin |
| GVI77_RS09820 | 2089331..2089987 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| GVI77_RS09825 | 2089988..2090179 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GVI77_RS09830 | 2090284..2090520 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GVI77_RS09835 | 2090637..2092076 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T147392 NZ_CP047710:2089094-2089196 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT147392 NZ_CP047710:c2089234-2088966 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
