Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1813831..1813976 | Replicon | chromosome |
| Accession | NZ_CP047707 | ||
| Organism | Klebsiella pneumoniae strain Kpn-13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1813867..1813969 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1813831..1813976 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI78_RS08800 | 1808961..1811021 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| GVI78_RS08805 | 1811025..1811684 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GVI78_RS08810 | 1811763..1811993 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GVI78_RS08815 | 1812106..1812480 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GVI78_RS08820 | 1812484..1813353 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| GVI78_RS08825 | 1813370..1813708 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1813831..1813976 | - | 146 | - | - | Antitoxin |
| - | 1813867..1813969 | + | 103 | - | - | Toxin |
| GVI78_RS08830 | 1814345..1814488 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| GVI78_RS08835 | 1814593..1815561 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| GVI78_RS08840 | 1815718..1816371 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| GVI78_RS08845 | 1816368..1816559 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GVI78_RS08850 | 1816657..1816896 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GVI78_RS08855 | 1817012..1818445 | - | 1434 | WP_048292090.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T147368 NZ_CP047707:1813867-1813969 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT147368 NZ_CP047707:c1813976-1813831 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
