Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2178945..2179085 | Replicon | chromosome |
| Accession | NZ_CP047685 | ||
| Organism | Serratia marcescens strain 2838 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2178989..2179085 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2178945..2179085 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GV198_RS10595 | 2174147..2174572 | + | 426 | WP_033653830.1 | RNA polymerase-binding protein DksA | - |
| GV198_RS10600 | 2174765..2175718 | + | 954 | WP_033646426.1 | prolyl aminopeptidase | - |
| GV198_RS10605 | 2175750..2175980 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| GV198_RS10610 | 2176326..2176844 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| GV198_RS10615 | 2177169..2177552 | + | 384 | WP_004940886.1 | CopC domain-containing protein YobA | - |
| GV198_RS10620 | 2177555..2178436 | + | 882 | WP_047568032.1 | copper homeostasis membrane protein CopD | - |
| GV198_RS10625 | 2178506..2178847 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2178945..2179085 | - | 141 | - | - | Antitoxin |
| - | 2178989..2179085 | + | 97 | - | - | Toxin |
| GV198_RS10630 | 2179327..2179731 | + | 405 | WP_047568029.1 | hypothetical protein | - |
| GV198_RS10635 | 2179728..2179946 | - | 219 | WP_033638114.1 | hypothetical protein | - |
| GV198_RS10640 | 2180010..2180174 | - | 165 | WP_154609290.1 | hypothetical protein | - |
| GV198_RS10645 | 2180467..2180817 | + | 351 | WP_047568027.1 | DUF4377 domain-containing protein | - |
| GV198_RS10650 | 2181001..2182200 | + | 1200 | WP_033638117.1 | trans-2-enoyl-CoA reductase family protein | - |
| GV198_RS10655 | 2182428..2182646 | + | 219 | WP_072021565.1 | hypothetical protein | - |
| GV198_RS10660 | 2182818..2183123 | + | 306 | WP_047568025.1 | hypothetical protein | - |
| GV198_RS10665 | 2183167..2183502 | + | 336 | WP_047568023.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2173845..2182646 | 8801 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T147260 NZ_CP047685:2178989-2179085 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT147260 NZ_CP047685:c2179085-2178945 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
