Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3349179..3349324 | Replicon | chromosome |
| Accession | NZ_CP047675 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain KUH-KPNHVF1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3349186..3349288 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3349179..3349324 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GO010_RS15765 | 3344711..3346144 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GO010_RS15770 | 3346260..3346499 | + | 240 | WP_002911393.1 | YebV family protein | - |
| GO010_RS15775 | 3346597..3346788 | + | 192 | WP_002911395.1 | YebW family protein | - |
| GO010_RS15780 | 3346785..3347438 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| GO010_RS15785 | 3347595..3348563 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| GO010_RS15790 | 3348668..3348811 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3349179..3349324 | + | 146 | - | - | Antitoxin |
| - | 3349186..3349288 | - | 103 | - | - | Toxin |
| GO010_RS15795 | 3349447..3349785 | - | 339 | WP_002911404.1 | YebY family protein | - |
| GO010_RS15800 | 3349802..3350660 | - | 859 | Protein_3139 | copper homeostasis membrane protein CopD | - |
| GO010_RS15805 | 3350664..3351038 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GO010_RS15810 | 3351151..3351381 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GO010_RS15815 | 3351460..3352119 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GO010_RS15820 | 3352123..3354183 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T147200 NZ_CP047675:c3349288-3349186 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT147200 NZ_CP047675:3349179-3349324 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
