Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 351144..351254 | Replicon | chromosome |
| Accession | NZ_CP047671 | ||
| Organism | Edwardsiella piscicida strain CK41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 351151..351252 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 351144..351254 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GT752_RS01780 | 346581..350459 | + | 3879 | WP_252977014.1 | LPD5 domain-containing protein | - |
| GT752_RS01785 (GT752_01765) | 350456..351187 | + | 732 | WP_252977015.1 | hypothetical protein | - |
| - | 351144..351254 | - | 111 | - | - | Antitoxin |
| - | 351151..351252 | + | 102 | - | - | Toxin |
| GT752_RS01790 (GT752_01770) | 352267..352824 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| GT752_RS01795 (GT752_01775) | 352912..353271 | + | 360 | WP_012848484.1 | YcgJ family protein | - |
| GT752_RS01800 (GT752_01780) | 353513..354103 | - | 591 | WP_071818517.1 | hypothetical protein | - |
| GT752_RS01805 (GT752_01785) | 354176..354649 | - | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| GT752_RS01810 (GT752_01790) | 354660..354938 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| GT752_RS01815 (GT752_01795) | 354996..355619 | - | 624 | WP_012848489.1 | response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 307666..354938 | 47272 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T147181 NZ_CP047671:351151-351252 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT147181 NZ_CP047671:c351254-351144 [Edwardsiella piscicida]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
