Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2230961..2231107 | Replicon | chromosome |
| Accession | NZ_CP047669 | ||
| Organism | Klebsiella aerogenes strain HNHF1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2230969..2231072 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2230961..2231107 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUU79_RS12030 | 2226263..2226781 | + | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
| GUU79_RS12035 | 2226799..2227548 | + | 750 | WP_015366013.1 | molecular chaperone | - |
| GUU79_RS12040 | 2227551..2229875 | + | 2325 | WP_160184146.1 | fimbria/pilus outer membrane usher protein | - |
| GUU79_RS12045 | 2229894..2230841 | + | 948 | WP_032709999.1 | spore coat U domain-containing protein | - |
| - | 2230961..2231107 | + | 147 | - | - | Antitoxin |
| - | 2230969..2231072 | - | 104 | - | - | Toxin |
| GUU79_RS12050 | 2231229..2231570 | - | 342 | WP_015705946.1 | YebY family protein | - |
| GUU79_RS12055 | 2231584..2232453 | - | 870 | WP_015705947.1 | copper homeostasis membrane protein CopD | - |
| GUU79_RS12060 | 2232457..2232831 | - | 375 | WP_026612268.1 | CopC domain-containing protein YobA | - |
| GUU79_RS12065 | 2232966..2233196 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| GUU79_RS12070 | 2233276..2233935 | + | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| GUU79_RS12075 | 2233938..2235998 | - | 2061 | WP_160184147.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T147168 NZ_CP047669:c2231072-2230969 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT147168 NZ_CP047669:2230961-2231107 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
