Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1141512..1141783 | Replicon | chromosome |
| Accession | NZ_CP047665 | ||
| Organism | Escherichia coli strain LD26-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1141550..1141653 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1141512..1141783 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUU86_RS05520 | 1138669..1140108 | + | 1440 | WP_047629635.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GUU86_RS05525 | 1140226..1140462 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GUU86_RS05530 | 1140567..1140758 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GUU86_RS05535 | 1140759..1141415 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1141512..1141783 | + | 272 | - | - | Antitoxin |
| - | 1141550..1141653 | - | 104 | - | - | Toxin |
| GUU86_RS05540 | 1141811..1142152 | - | 342 | WP_000976472.1 | YebY family protein | - |
| GUU86_RS05545 | 1142165..1143037 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| GUU86_RS05550 | 1143041..1143415 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GUU86_RS05555 | 1143554..1143784 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GUU86_RS05560 | 1143886..1144542 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| GUU86_RS05565 | 1144566..1145228 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T147138 NZ_CP047665:c1141653-1141550 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT147138 NZ_CP047665:1141512-1141783 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
