Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2632934..2633202 | Replicon | chromosome |
| Accession | NZ_CP047662 | ||
| Organism | Escherichia coli strain LD93-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2632972..2633075 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2632934..2633202 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUU84_RS12480 | 2630091..2631530 | + | 1440 | WP_024189843.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GUU84_RS12485 | 2631648..2631884 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GUU84_RS12490 | 2631989..2632180 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GUU84_RS12495 | 2632181..2632837 | - | 657 | WP_001515444.1 | protein-serine/threonine phosphatase | - |
| - | 2632934..2633202 | + | 269 | - | - | Antitoxin |
| - | 2632972..2633075 | - | 104 | - | - | Toxin |
| GUU84_RS12500 | 2633232..2633573 | - | 342 | WP_001515445.1 | YebY family protein | - |
| GUU84_RS12505 | 2633586..2634458 | - | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| GUU84_RS12510 | 2634462..2634836 | - | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| GUU84_RS12515 | 2634975..2635205 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GUU84_RS12520 | 2635307..2635963 | + | 657 | WP_094318722.1 | carbon-nitrogen hydrolase family protein | - |
| GUU84_RS12525 | 2635987..2636649 | + | 663 | WP_160188226.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T147112 NZ_CP047662:c2633075-2632972 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT147112 NZ_CP047662:2632934-2633202 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
