Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2025768..2025913 | Replicon | chromosome |
| Accession | NZ_CP047649 | ||
| Organism | Klebsiella pneumoniae strain 158590 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2025804..2025906 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2025768..2025913 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTK59_RS09900 | 2020898..2022958 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| GTK59_RS09905 | 2022962..2023621 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GTK59_RS09910 | 2023700..2023930 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GTK59_RS09915 | 2024043..2024417 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GTK59_RS09920 | 2024421..2025290 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| GTK59_RS09925 | 2025307..2025645 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2025768..2025913 | - | 146 | - | - | Antitoxin |
| - | 2025804..2025906 | + | 103 | - | - | Toxin |
| GTK59_RS09930 | 2026281..2026424 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| GTK59_RS09935 | 2026529..2027497 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| GTK59_RS09940 | 2027654..2028307 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| GTK59_RS09945 | 2028304..2028495 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GTK59_RS09950 | 2028593..2028832 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GTK59_RS09955 | 2028948..2030381 | - | 1434 | WP_160192556.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T147049 NZ_CP047649:2025804-2025906 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT147049 NZ_CP047649:c2025913-2025768 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
