Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2125050..2125193 | Replicon | chromosome |
| Accession | NZ_CP047606 | ||
| Organism | Citrobacter sp. LUTT5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2125085..2125188 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2125050..2125193 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUC46_RS10140 | 2121497..2122159 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
| GUC46_RS10145 | 2122183..2122839 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| GUC46_RS10150 | 2122946..2123176 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| GUC46_RS10155 | 2123320..2123694 | + | 375 | WP_044711069.1 | CopC domain-containing protein YobA | - |
| GUC46_RS10160 | 2123698..2124570 | + | 873 | WP_049002332.1 | copper homeostasis membrane protein CopD | - |
| GUC46_RS10165 | 2124591..2124929 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2125050..2125193 | - | 144 | - | - | Antitoxin |
| - | 2125085..2125188 | + | 104 | - | - | Toxin |
| GUC46_RS10170 | 2125342..2125983 | + | 642 | WP_058842357.1 | protein-serine/threonine phosphatase | - |
| GUC46_RS10175 | 2125984..2126175 | - | 192 | WP_003034941.1 | YebW family protein | - |
| GUC46_RS10180 | 2126278..2126514 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| GUC46_RS10185 | 2126615..2128003 | - | 1389 | WP_061548593.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146912 NZ_CP047606:2125085-2125188 [Citrobacter sp. LUTT5]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT146912 NZ_CP047606:c2125193-2125050 [Citrobacter sp. LUTT5]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
