Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2527409..2527680 | Replicon | chromosome |
| Accession | NZ_CP047594 | ||
| Organism | Escherichia coli strain LD27-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2527447..2527550 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2527409..2527680 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUU88_RS12330 | 2524566..2526005 | + | 1440 | WP_077250717.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GUU88_RS12335 | 2526123..2526359 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GUU88_RS12340 | 2526464..2526655 | + | 192 | WP_000457842.1 | YebW family protein | - |
| GUU88_RS12345 | 2526656..2527312 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2527409..2527680 | + | 272 | - | - | Antitoxin |
| - | 2527447..2527550 | - | 104 | - | - | Toxin |
| GUU88_RS12350 | 2527708..2528049 | - | 342 | WP_000976476.1 | YebY family protein | - |
| GUU88_RS12355 | 2528062..2528934 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| GUU88_RS12360 | 2528938..2529312 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GUU88_RS12365 | 2529451..2529681 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GUU88_RS12370 | 2529783..2530439 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GUU88_RS12375 | 2530463..2531125 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146828 NZ_CP047594:c2527550-2527447 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT146828 NZ_CP047594:2527409-2527680 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
