Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /Acetyltransf_4(toxin)
Location 3003975..3005483 Replicon chromosome
Accession NZ_CP047592
Organism Pseudomonas aeruginosa strain INP-43

Toxin (Protein)


Gene name - Uniprot ID Q9HYX1
Locus tag GQS72_RS13840 Protein ID WP_003119682.1
Coordinates 3003975..3004562 (+) Length 196 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID A0A1C7C4U7
Locus tag GQS72_RS13845 Protein ID WP_003091607.1
Coordinates 3004629..3005483 (+) Length 285 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GQS72_RS13835 3000230..3003709 - 3480 WP_003117605.1 hybrid sensor histidine kinase/response regulator -
GQS72_RS13840 3003975..3004562 + 588 WP_003119682.1 GNAT family N-acetyltransferase Toxin
GQS72_RS13845 3004629..3005483 + 855 WP_003091607.1 AraC family transcriptional regulator Antitoxin
GQS72_RS13850 3005580..3007745 + 2166 WP_016852624.1 TonB-dependent receptor family protein -
GQS72_RS13855 3007920..3009794 + 1875 WP_003158329.1 MFS transporter -
GQS72_RS13860 3009855..3010064 - 210 WP_003115568.1 cold-shock protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(20-152)

Antitoxin

AraC-type arabinose-binding/dimerisation domain

(19-151)


Sequences

Toxin        


Download         Length: 196 a.a.        Molecular weight: 21901.23 Da        Isoelectric Point: 9.8676

>T146809 WP_003119682.1 NZ_CP047592:3003975-3004562 [Pseudomonas aeruginosa]
MSRRAPMFKPLPITLQRGALRLEPLVEADIPELVSLAEANREALQYMDGPTRPDWYRQSLAEQREGRALPLAVRLGVQLV
GTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRN
HRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG

Download         Length: 588 bp

>T146809 NZ_CP062788:652810-653103 [Aestuariispira ectoiniformans]
ATGACCTATAAGCTTGAATTCAATAAGTCGGCCCTCAAGGAATGGAGTAAGCTGGAGGCGACGACCAAGGCGCAATTCAA
GAAGAAACTCGCGGAGCGTCTCGAACATCCGGAAGTGCCCGCCAGCCGTCTGCGTATGTCCGACAATGCCTATAAAATTA
AGCTGCGAAATTCCGGCTATCGCCTTGTCTATACCGTAGACAACGACCGTATTGTCGTGACGGTCGTTGCCGTTGGAAAA
CGTAACCGTAACGTCGTCTACAAGGCTGCGAAGACGCGCCTGAAAAACACCTGA

Antitoxin


Download         Length: 285 a.a.        Molecular weight: 31895.20 Da        Isoelectric Point: 7.5295

>AT146809 WP_003091607.1 NZ_CP047592:3004629-3005483 [Pseudomonas aeruginosa]
VPDETSGEHTHFWRAAELGGVELLHARYVEQRFAPHVHSSFALVIIEQGAQRFRHRGGEHLAPLGSMVLINPDEVHTGSK
AHDAGWLYRGYYPEMEQIDGILDELEIHHGGVPRFADSVIHDQPLARAFVHLHRLLAEHAGSLETQTRWRETMLALFRRH
ARLPEAPKAGQEPLAVARARELLAARLLDPPSLEELAAAVNLSPFHFARVFRRATGMPPHAWLRQRRLEQARALLKSGRA
PLEVALELGFADQSHLGRQFKQAYGVAPGEYRSACARSSLTTYE

Download         Length: 855 bp

>AT146809 NZ_CP062788:652614-652820 [Aestuariispira ectoiniformans]
ATGACAGACCTGCGCCGCGACCCCACACCTGTCGTGGAGGCAGGCCAGCCGGTGGCCGTCTTGAACCGGAACAAGCCGGT
ATCATACATGGTTCCGGCGGATATCTATGAAGCCATGCTGGATGCGCTAGAGGATATTGACGATCTGAAACTGGTCCGCG
AGCGGGCGGACGAAGAGACGGTCGAAGTCAGCCTTGATGACCTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 1YRE
PDB 8GXJ

Antitoxin

Source ID Structure
AlphaFold DB A0A1C7C4U7

References