Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 37750..38021 Replicon chromosome
Accession NZ_CP047576
Organism Escherichia coli strain 94EC

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 37880..37983 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 37750..38021 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GUJ28_RS00185 34305..34967 - 663 WP_000944256.1 exodeoxyribonuclease X -
GUJ28_RS00190 34991..35647 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
GUJ28_RS00195 35749..35979 - 231 WP_000916763.1 DNA polymerase III subunit theta -
GUJ28_RS00200 36118..36492 + 375 WP_000204699.1 CopC domain-containing protein YobA -
GUJ28_RS00205 36496..37368 + 873 WP_000879282.1 copper homeostasis membrane protein CopD -
GUJ28_RS00210 37381..37722 + 342 WP_000976472.1 YebY family protein -
- 37750..38021 - 272 - - Antitoxin
- 37880..37983 + 104 - - Toxin
GUJ28_RS00215 38118..38774 + 657 WP_000812735.1 protein-serine/threonine phosphatase -
GUJ28_RS00220 38775..38966 - 192 WP_001296140.1 YebW family protein -
GUJ28_RS00225 39071..39307 - 237 WP_001295499.1 DUF1480 family protein -
GUJ28_RS00230 39425..40864 - 1440 WP_001307251.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T146758 NZ_CP047576:37880-37983 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT146758 NZ_CP047576:c38021-37750 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References