Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1931910..1932181 | Replicon | chromosome |
| Accession | NZ_CP047571 | ||
| Organism | Escherichia coli strain 2EC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1932040..1932143 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1931910..1932181 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTQ78_RS09220 | 1928465..1929127 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GTQ78_RS09225 | 1929151..1929807 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| GTQ78_RS09230 | 1929909..1930139 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GTQ78_RS09235 | 1930278..1930652 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| GTQ78_RS09240 | 1930656..1931528 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| GTQ78_RS09245 | 1931541..1931882 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1931910..1932181 | - | 272 | - | - | Antitoxin |
| - | 1932040..1932143 | + | 104 | - | - | Toxin |
| GTQ78_RS09250 | 1932278..1932934 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| GTQ78_RS09255 | 1932935..1933126 | - | 192 | WP_001338167.1 | YebW family protein | - |
| GTQ78_RS09260 | 1933231..1933467 | - | 237 | WP_137433900.1 | DUF1480 family protein | - |
| GTQ78_RS09265 | 1933584..1935023 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146733 NZ_CP047571:1932040-1932143 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT146733 NZ_CP047571:c1932181-1931910 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
