Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1683783..1683992 | Replicon | chromosome |
| Accession | NZ_CP047570 | ||
| Organism | Enterobacter hormaechei strain F2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1683876..1683979 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1683783..1683992 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTQ93_RS08035 | 1680321..1680983 | - | 663 | WP_045339373.1 | exodeoxyribonuclease X | - |
| GTQ93_RS08040 | 1681007..1681657 | - | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| GTQ93_RS08045 | 1681769..1681999 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GTQ93_RS08050 | 1682137..1682508 | + | 372 | WP_159403487.1 | CopC domain-containing protein YobA | - |
| GTQ93_RS08055 | 1682510..1683379 | + | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| GTQ93_RS08060 | 1683396..1683734 | + | 339 | WP_032669635.1 | YebY family protein | - |
| - | 1683783..1683992 | - | 210 | - | - | Antitoxin |
| GTQ93_RS08065 | 1683860..1684057 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 1683876..1683979 | + | 104 | - | - | Toxin |
| GTQ93_RS08070 | 1684103..1685083 | - | 981 | WP_062938806.1 | VirK/YbjX family protein | - |
| GTQ93_RS08075 | 1685251..1685895 | + | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| GTQ93_RS08080 | 1685930..1686169 | - | 240 | WP_003859885.1 | YebV family protein | - |
| GTQ93_RS08085 | 1686276..1687724 | - | 1449 | WP_201748097.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146715 NZ_CP047570:1683876-1683979 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT146715 NZ_CP047570:c1683992-1683783 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
