Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2017307..2017578 | Replicon | chromosome |
| Accession | NZ_CP047469 | ||
| Organism | Escherichia coli strain DY612 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2017437..2017540 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2017307..2017578 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTK51_RS09840 | 2013862..2014524 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GTK51_RS09845 | 2014548..2015204 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| GTK51_RS09850 | 2015306..2015536 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GTK51_RS09855 | 2015675..2016049 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GTK51_RS09860 | 2016053..2016925 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| GTK51_RS09865 | 2016938..2017279 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2017307..2017578 | - | 272 | - | - | Antitoxin |
| - | 2017437..2017540 | + | 104 | - | - | Toxin |
| GTK51_RS09870 | 2017675..2018331 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GTK51_RS09875 | 2018332..2018523 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GTK51_RS09880 | 2018628..2018864 | - | 237 | WP_001295499.1 | YebV family protein | - |
| GTK51_RS09885 | 2018982..2020421 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146280 NZ_CP047469:2017437-2017540 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT146280 NZ_CP047469:c2017578-2017307 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
