Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 957939..958210 | Replicon | chromosome |
| Accession | NZ_CP047461 | ||
| Organism | Escherichia coli strain ZF34 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 957977..958080 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 957939..958210 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTK64_RS04650 | 955096..956535 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GTK64_RS04655 | 956653..956889 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| GTK64_RS04660 | 956994..957185 | + | 192 | WP_001338167.1 | YebW family protein | - |
| GTK64_RS04665 | 957186..957842 | - | 657 | WP_164538437.1 | protein-serine/threonine phosphatase | - |
| - | 957939..958210 | + | 272 | - | - | Antitoxin |
| - | 957977..958080 | - | 104 | - | - | Toxin |
| GTK64_RS04670 | 958238..958579 | - | 342 | WP_000976472.1 | YebY family protein | - |
| GTK64_RS04675 | 958592..959464 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| GTK64_RS04680 | 959468..959842 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GTK64_RS04685 | 959981..960211 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GTK64_RS04690 | 960313..960969 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GTK64_RS04695 | 960993..961655 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146252 NZ_CP047461:c958080-957977 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT146252 NZ_CP047461:957939-958210 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
