Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2521235..2521380 | Replicon | chromosome |
| Accession | NZ_CP047424 | ||
| Organism | Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-SAL0043 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2521237..2521340 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2521235..2521380 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTK42_RS12245 | 2516707..2516973 | + | 267 | WP_077906534.1 | hypothetical protein | - |
| GTK42_RS12250 | 2517142..2517282 | + | 141 | WP_001640444.1 | hypothetical protein | - |
| GTK42_RS12255 | 2517428..2517969 | - | 542 | Protein_2411 | transposase | - |
| GTK42_RS12260 | 2518071..2520491 | - | 2421 | WP_024146377.1 | type III secretion system effector SspH3 | - |
| GTK42_RS23435 | 2520664..2520747 | - | 84 | Protein_2413 | phage tail protein | - |
| GTK42_RS12270 | 2520759..2521106 | + | 348 | Protein_2414 | tyrosine-type recombinase/integrase | - |
| - | 2521235..2521380 | + | 146 | - | - | Antitoxin |
| - | 2521237..2521340 | - | 104 | - | - | Toxin |
| GTK42_RS12275 | 2521480..2521833 | - | 354 | WP_000722368.1 | YebY family protein | - |
| GTK42_RS12280 | 2521850..2522725 | - | 876 | WP_000979697.1 | copper homeostasis membrane protein CopD | - |
| GTK42_RS12285 | 2522726..2523100 | - | 375 | WP_000168396.1 | CopC domain-containing protein YobA | - |
| GTK42_RS12290 | 2523238..2523468 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| GTK42_RS12295 | 2523576..2524232 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| GTK42_RS12300 | 2524256..2524954 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2517428..2517766 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146208 NZ_CP047424:c2521340-2521237 [Salmonella enterica subsp. enterica serovar Dessau]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT146208 NZ_CP047424:2521235-2521380 [Salmonella enterica subsp. enterica serovar Dessau]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
