Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2448593..2448661 | Replicon | chromosome |
| Accession | NZ_CP047378 | ||
| Organism | Escherichia coli strain CAU16175 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2448593..2448623 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2448593..2448661 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTP13_RS12360 | 2444337..2444960 | + | 624 | WP_167582691.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| GTP13_RS12365 | 2445025..2446338 | + | 1314 | WP_167582694.1 | phage tail protein | - |
| GTP13_RS12370 | 2446340..2446609 | + | 270 | WP_053921583.1 | phage tail fiber C-terminal domain-containing protein | - |
| GTP13_RS12380 | 2447012..2448025 | + | 1014 | WP_122993102.1 | M85 family metallopeptidase | - |
| - | 2448593..2448623 | + | 31 | - | - | Toxin |
| - | 2448593..2448661 | - | 69 | - | - | Antitoxin |
| GTP13_RS12385 | 2448758..2449414 | + | 657 | WP_167582697.1 | protein-serine/threonine phosphatase | - |
| GTP13_RS12390 | 2449415..2449606 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GTP13_RS12395 | 2449711..2449947 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GTP13_RS12400 | 2450065..2451504 | - | 1440 | WP_096317597.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleC | 2382366..2464499 | 82133 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
