Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2395343..2395577 | Replicon | chromosome |
| Accession | NZ_CP047378 | ||
| Organism | Escherichia coli strain CAU16175 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2395473..2395576 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2395343..2395577 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTP13_RS11990 | 2391898..2392560 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GTP13_RS11995 | 2392584..2393240 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GTP13_RS12000 | 2393342..2393572 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GTP13_RS12005 | 2393711..2394085 | + | 375 | WP_096245560.1 | CopC domain-containing protein YobA | - |
| GTP13_RS12010 | 2394089..2394961 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GTP13_RS12015 | 2394974..2395315 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2395343..2395577 | - | 235 | - | - | Antitoxin |
| - | 2395473..2395576 | + | 104 | - | - | Toxin |
| GTP13_RS12020 | 2395708..2396784 | - | 1077 | WP_001189085.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| GTP13_RS12025 | 2396750..2397031 | - | 282 | WP_097412098.1 | excisionase | - |
| GTP13_RS12030 | 2397138..2397326 | - | 189 | WP_024177035.1 | DUF1187 family protein | - |
| - | 2397142..2397320 | + | 179 | NuclAT_1 | - | - |
| - | 2397142..2397320 | + | 179 | NuclAT_1 | - | - |
| - | 2397142..2397320 | + | 179 | NuclAT_1 | - | - |
| - | 2397142..2397320 | + | 179 | NuclAT_1 | - | - |
| GTP13_RS12035 | 2397319..2397513 | - | 195 | WP_010989194.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| GTP13_RS12040 | 2397577..2398629 | - | 1053 | WP_001004413.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleC | 2382366..2464499 | 82133 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146081 NZ_CP047378:2395473-2395576 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT146081 NZ_CP047378:c2395577-2395343 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
