Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2703639..2703784 | Replicon | chromosome |
| Accession | NZ_CP047336 | ||
| Organism | Klebsiella pneumoniae strain 2019036D | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2703646..2703748 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2703639..2703784 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTH21_RS13570 | 2699171..2700604 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GTH21_RS13575 | 2700720..2700959 | + | 240 | WP_002911393.1 | YebV family protein | - |
| GTH21_RS13580 | 2701057..2701248 | + | 192 | WP_002911395.1 | YebW family protein | - |
| GTH21_RS13585 | 2701245..2701898 | - | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| GTH21_RS13590 | 2702055..2703023 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| GTH21_RS13595 | 2703128..2703271 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2703639..2703784 | + | 146 | - | - | Antitoxin |
| - | 2703646..2703748 | - | 103 | - | - | Toxin |
| GTH21_RS13600 | 2703907..2704245 | - | 339 | WP_002911404.1 | YebY family protein | - |
| GTH21_RS13605 | 2704262..2705131 | - | 870 | WP_019725445.1 | copper homeostasis membrane protein CopD | - |
| GTH21_RS13610 | 2705135..2705509 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GTH21_RS13615 | 2705622..2705852 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GTH21_RS13620 | 2705931..2706590 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GTH21_RS13625 | 2706594..2708654 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T145988 NZ_CP047336:c2703748-2703646 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT145988 NZ_CP047336:2703639-2703784 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
