Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1933070..1933217 | Replicon | chromosome |
| Accession | NZ_CP047281 | ||
| Organism | Klebsiella quasipneumoniae strain N18-04101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1933111..1933213 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1933070..1933217 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3109_RS09440 | 1928205..1930265 | + | 2061 | WP_183473972.1 | oligopeptidase B | - |
| F3109_RS09445 | 1930269..1930928 | - | 660 | WP_060656067.1 | exodeoxyribonuclease X | - |
| F3109_RS09450 | 1931007..1931237 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| F3109_RS09455 | 1931350..1931724 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| F3109_RS09460 | 1931728..1932597 | + | 870 | WP_135722190.1 | copper homeostasis membrane protein CopD | - |
| F3109_RS09465 | 1932614..1932952 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1933070..1933217 | - | 148 | - | - | Antitoxin |
| - | 1933111..1933213 | + | 103 | - | - | Toxin |
| F3109_RS09470 | 1933601..1933744 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| F3109_RS09475 | 1933848..1934816 | - | 969 | WP_064177661.1 | VirK/YbjX family protein | - |
| F3109_RS09480 | 1934973..1935626 | + | 654 | WP_023318613.1 | protein-serine/threonine phosphatase | - |
| F3109_RS09485 | 1935623..1935814 | - | 192 | WP_002911395.1 | YebW family protein | - |
| F3109_RS09490 | 1935912..1936151 | - | 240 | WP_183473974.1 | YebV family protein | - |
| F3109_RS09495 | 1936268..1937701 | - | 1434 | WP_065802960.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T145773 NZ_CP047281:1933111-1933213 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT145773 NZ_CP047281:c1933217-1933070 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
