Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2230228..2230371 | Replicon | chromosome |
| Accession | NZ_CP047279 | ||
| Organism | Citrobacter freundii strain N18-04128 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2230263..2230366 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2230228..2230371 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3113_RS10785 | 2225389..2226291 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| F3113_RS10790 | 2227288..2227875 | - | 588 | WP_106107223.1 | hypothetical protein | - |
| F3113_RS10795 | 2228498..2228872 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| F3113_RS10800 | 2228876..2229748 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| F3113_RS10805 | 2229769..2230107 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2230228..2230371 | - | 144 | - | - | Antitoxin |
| - | 2230263..2230366 | + | 104 | - | - | Toxin |
| F3113_RS10810 | 2230520..2231161 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| F3113_RS10815 | 2231162..2231353 | - | 192 | WP_003034941.1 | YebW family protein | - |
| F3113_RS10820 | 2231456..2231692 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| F3113_RS10825 | 2231793..2233181 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T145756 NZ_CP047279:2230263-2230366 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT145756 NZ_CP047279:c2230371-2230228 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
