Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-RelB |
Location | 2242225..2242751 | Replicon | chromosome |
Accession | NZ_CP047277 | ||
Organism | Escherichia coli strain N18-04097 |
Toxin (Protein)
Gene name | relE | Uniprot ID | S1EXL1 |
Locus tag | F3052_RS10770 | Protein ID | WP_000323025.1 |
Coordinates | 2242464..2242751 (+) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | S1F6D3 |
Locus tag | F3052_RS10765 | Protein ID | WP_000534858.1 |
Coordinates | 2242225..2242464 (+) | Length | 80 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
F3052_RS10745 | 2237587..2237943 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
F3052_RS24360 | 2238554..2238841 | + | 288 | Protein_2101 | hypothetical protein | - |
F3052_RS10750 | 2239610..2240923 | + | 1314 | WP_000589005.1 | ISNCY family transposase | - |
F3052_RS10755 | 2241360..2241692 | - | 333 | WP_001301033.1 | protein FlxA | - |
F3052_RS10760 | 2241895..2242200 | - | 306 | WP_001326990.1 | hypothetical protein | - |
F3052_RS10765 | 2242225..2242464 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
F3052_RS10770 | 2242464..2242751 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
F3052_RS10775 | 2242823..2242978 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
F3052_RS10780 | 2243195..2243446 | + | 252 | WP_000980994.1 | hypothetical protein | - |
F3052_RS10785 | 2243513..2243791 | + | 279 | WP_012304870.1 | hypothetical protein | - |
F3052_RS10790 | 2243793..2244842 | + | 1050 | WP_001424248.1 | DUF968 domain-containing protein | - |
F3052_RS10795 | 2244856..2245608 | + | 753 | WP_001047136.1 | antitermination protein | - |
F3052_RS10800 | 2245886..2245975 | - | 90 | WP_120795389.1 | hypothetical protein | - |
F3052_RS10805 | 2246030..2246242 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
F3052_RS10810 | 2246543..2246758 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
F3052_RS10815 | 2247512..2247727 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 2225073..2279021 | 53948 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T145740 WP_000323025.1 NZ_CP047277:2242464-2242751 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T145740 NZ_CP062439:2743775-2744137 [Staphylococcus aureus]
ATGATTAGACGAGGAGATGTTTATTTAGCAGATTTATCACCAGTACAGGGATCTGAACAAGGGGGAGTCAGACCTGTAGT
CATAATTCAAAATGATACTGGTAATAAATATAGTCCTACAGTTATTGTTGCGGCAATAACTGGTAGGATTAATAAAGCGA
AAATACCGACACATGTAGAGATTGAAAAGAAAAAGTATAAGTTGGATAAAGACTCAGTTATATTATTAGAACAAATTCGT
ACACTTGATAAAAAACGATTGAAAGAAAAACTGACGTACTTATCCGATGATAAAATGAAAGAAGTAGATAATGCACTAAT
GATTAGTTTAGGGCTGAATGCAGTAGCTCACCAGAAAAATTAG
ATGATTAGACGAGGAGATGTTTATTTAGCAGATTTATCACCAGTACAGGGATCTGAACAAGGGGGAGTCAGACCTGTAGT
CATAATTCAAAATGATACTGGTAATAAATATAGTCCTACAGTTATTGTTGCGGCAATAACTGGTAGGATTAATAAAGCGA
AAATACCGACACATGTAGAGATTGAAAAGAAAAAGTATAAGTTGGATAAAGACTCAGTTATATTATTAGAACAAATTCGT
ACACTTGATAAAAAACGATTGAAAGAAAAACTGACGTACTTATCCGATGATAAAATGAAAGAAGTAGATAATGCACTAAT
GATTAGTTTAGGGCTGAATGCAGTAGCTCACCAGAAAAATTAG
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT145740 WP_000534858.1 NZ_CP047277:2242225-2242464 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT145740 NZ_CP062439:2743608-2743778 [Staphylococcus aureus]
ATGTTATCTTTTAGTCAAAATAGAAGTCATAGCTTAGAACAATCTTTAAAAGAAGGATATTCACAAATGGCTGATTTAAA
TCTCTCCCTAGCGAACGAAGCTTTTCCGATAGAGTGTGAAGCATGCGATTGCAACGAAACATATTTATCTTCTAATTCAA
CGAATGAATGA
ATGTTATCTTTTAGTCAAAATAGAAGTCATAGCTTAGAACAATCTTTAAAAGAAGGATATTCACAAATGGCTGATTTAAA
TCTCTCCCTAGCGAACGAAGCTTTTCCGATAGAGTGTGAAGCATGCGATTGCAACGAAACATATTTATCTTCTAATTCAA
CGAATGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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