Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2200358..2200501 | Replicon | chromosome |
| Accession | NZ_CP047273 | ||
| Organism | Citrobacter freundii strain N18-04078 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2200393..2200496 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2200358..2200501 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3085_RS10575 | 2195509..2196411 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| F3085_RS10580 | 2196731..2196922 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| F3085_RS10585 | 2197415..2198002 | - | 588 | WP_106107223.1 | hypothetical protein | - |
| F3085_RS10590 | 2198628..2199002 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| F3085_RS10595 | 2199006..2199878 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| F3085_RS10600 | 2199899..2200237 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2200358..2200501 | - | 144 | - | - | Antitoxin |
| - | 2200393..2200496 | + | 104 | - | - | Toxin |
| F3085_RS10605 | 2200650..2201291 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| F3085_RS10610 | 2201292..2201483 | - | 192 | WP_003034941.1 | YebW family protein | - |
| F3085_RS10615 | 2201586..2201822 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| F3085_RS10620 | 2201923..2203311 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2121148..2206057 | 84909 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T145689 NZ_CP047273:2200393-2200496 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT145689 NZ_CP047273:c2200501-2200358 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
