Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3131980..3132125 | Replicon | chromosome |
| Accession | NZ_CP047271 | ||
| Organism | Klebsiella pneumoniae strain N16-03892 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3131987..3132089 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3131980..3132125 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3090_RS15505 | 3127512..3128945 | + | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F3090_RS15510 | 3129061..3129300 | + | 240 | WP_002911393.1 | YebV family protein | - |
| F3090_RS15515 | 3129398..3129589 | + | 192 | WP_002911395.1 | YebW family protein | - |
| F3090_RS15520 | 3129586..3130239 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| F3090_RS15525 | 3130396..3131364 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| F3090_RS15530 | 3131469..3131612 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3131980..3132125 | + | 146 | - | - | Antitoxin |
| - | 3131987..3132089 | - | 103 | - | - | Toxin |
| F3090_RS15535 | 3132248..3132586 | - | 339 | WP_002911404.1 | YebY family protein | - |
| F3090_RS15540 | 3132603..3133472 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| F3090_RS15545 | 3133476..3133850 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| F3090_RS15550 | 3133963..3134193 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| F3090_RS15555 | 3134272..3134931 | + | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| F3090_RS15560 | 3134935..3136995 | - | 2061 | WP_040213005.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T145667 NZ_CP047271:c3132089-3131987 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT145667 NZ_CP047271:3131980-3132125 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
