Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2230940..2231083 | Replicon | chromosome |
| Accession | NZ_CP047269 | ||
| Organism | Citrobacter freundii strain N16-03880 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2230975..2231078 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2230940..2231083 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3114_RS10800 | 2226091..2226993 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| F3114_RS10805 | 2227313..2227504 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| F3114_RS10810 | 2227997..2228584 | - | 588 | WP_106107223.1 | hypothetical protein | - |
| F3114_RS10815 | 2229210..2229584 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| F3114_RS10820 | 2229588..2230460 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| F3114_RS10825 | 2230481..2230819 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2230940..2231083 | - | 144 | - | - | Antitoxin |
| - | 2230975..2231078 | + | 104 | - | - | Toxin |
| F3114_RS10830 | 2231232..2231873 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| F3114_RS10835 | 2231874..2232065 | - | 192 | WP_003034941.1 | YebW family protein | - |
| F3114_RS10840 | 2232168..2232404 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| F3114_RS10845 | 2232505..2233893 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2151730..2239300 | 87570 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T145646 NZ_CP047269:2230975-2231078 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT145646 NZ_CP047269:c2231083-2230940 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
