Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1840402..1840673 | Replicon | chromosome |
| Accession | NZ_CP047231 | ||
| Organism | Escherichia coli strain BL21-AI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1840440..1840543 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1840402..1840673 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSU80_RS09070 | 1837559..1838998 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GSU80_RS09075 | 1839116..1839352 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GSU80_RS09080 | 1839457..1839648 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GSU80_RS09085 | 1839649..1840305 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1840402..1840673 | + | 272 | - | - | Antitoxin |
| - | 1840440..1840543 | - | 104 | - | - | Toxin |
| GSU80_RS09090 | 1840700..1841041 | - | 342 | WP_000976472.1 | YebY family protein | - |
| GSU80_RS09095 | 1841054..1841926 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| GSU80_RS09100 | 1841930..1842304 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GSU80_RS09105 | 1842443..1842673 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GSU80_RS09110 | 1842775..1843431 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| GSU80_RS09115 | 1843455..1844117 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T145596 NZ_CP047231:c1840543-1840440 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT145596 NZ_CP047231:1840402-1840673 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
