Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2471376..2471647 | Replicon | chromosome |
| Accession | NZ_CP047010 | ||
| Organism | Escherichia coli strain 19-5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2471414..2471517 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2471376..2471647 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQF95_RS12010 | 2468533..2469972 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GQF95_RS12015 | 2470090..2470326 | + | 237 | WP_001295499.1 | YebV family protein | - |
| GQF95_RS12020 | 2470431..2470622 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GQF95_RS12025 | 2470623..2471279 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2471376..2471647 | + | 272 | - | - | Antitoxin |
| - | 2471414..2471517 | - | 104 | - | - | Toxin |
| GQF95_RS12030 | 2471675..2472016 | - | 342 | WP_000976472.1 | YebY family protein | - |
| GQF95_RS12035 | 2472029..2472901 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| GQF95_RS12040 | 2472905..2473279 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GQF95_RS12045 | 2473418..2473648 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GQF95_RS12050 | 2473750..2474406 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| GQF95_RS12055 | 2474430..2475092 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T145299 NZ_CP047010:c2471517-2471414 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT145299 NZ_CP047010:2471376-2471647 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
