Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2042841..2042986 | Replicon | chromosome |
| Accession | NZ_CP046957 | ||
| Organism | Klebsiella pneumoniae strain WCHKP015247 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2042877..2042979 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2042841..2042986 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6M24_RS10005 (C6M24_09890) | 2037971..2040031 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C6M24_RS10010 (C6M24_09895) | 2040035..2040694 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| C6M24_RS10015 (C6M24_09900) | 2040773..2041003 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C6M24_RS10020 (C6M24_09905) | 2041116..2041490 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C6M24_RS10025 (C6M24_09910) | 2041494..2042363 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| C6M24_RS10030 (C6M24_09915) | 2042380..2042718 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2042841..2042986 | - | 146 | - | - | Antitoxin |
| - | 2042877..2042979 | + | 103 | - | - | Toxin |
| C6M24_RS10035 (C6M24_09920) | 2043354..2043497 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C6M24_RS10040 (C6M24_09925) | 2043602..2044570 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C6M24_RS10045 (C6M24_09930) | 2044727..2045380 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| C6M24_RS10050 (C6M24_09935) | 2045377..2045568 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C6M24_RS10055 (C6M24_09940) | 2045666..2045905 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C6M24_RS10060 (C6M24_09945) | 2046021..2047454 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T145201 NZ_CP046957:2042877-2042979 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT145201 NZ_CP046957:c2042986-2042841 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
