Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 778306..778871 | Replicon | chromosome |
| Accession | NZ_CP046826 | ||
| Organism | Vibrio mimicus strain 07-2442 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | GPY05_RS17715 | Protein ID | WP_199246943.1 |
| Coordinates | 778584..778871 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | W9USL4 |
| Locus tag | GPY05_RS17710 | Protein ID | WP_000086650.1 |
| Coordinates | 778306..778587 (+) | Length | 94 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY05_RS17675 | 773314..774234 | - | 921 | WP_158163325.1 | IS5 family transposase | - |
| GPY05_RS17680 | 774298..774723 | + | 426 | WP_158163522.1 | DUF1311 domain-containing protein | - |
| GPY05_RS17685 | 774883..775964 | + | 1082 | Protein_710 | calcium/sodium antiporter | - |
| GPY05_RS17690 | 776437..776558 | + | 122 | Protein_711 | DUF3265 domain-containing protein | - |
| GPY05_RS17700 | 776962..777498 | + | 537 | WP_005526589.1 | nucleotidyltransferase family protein | - |
| GPY05_RS17705 | 777702..778091 | + | 390 | WP_199246941.1 | VOC family protein | - |
| GPY05_RS17710 | 778306..778587 | + | 282 | WP_000086650.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| GPY05_RS17715 | 778584..778871 | + | 288 | WP_199246943.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| GPY05_RS17720 | 779032..779475 | + | 444 | WP_061051361.1 | hypothetical protein | - |
| GPY05_RS17725 | 779648..779947 | - | 300 | WP_045369102.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GPY05_RS17730 | 779955..780197 | - | 243 | WP_005443875.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| GPY05_RS17735 | 780272..780400 | + | 129 | WP_158163523.1 | DUF3265 domain-containing protein | - |
| GPY05_RS17740 | 780585..780767 | + | 183 | WP_158163298.1 | DUF645 family protein | - |
| GPY05_RS17750 | 781439..781904 | + | 466 | Protein_721 | GNAT family N-acetyltransferase | - |
| GPY05_RS17755 | 781961..782050 | + | 90 | WP_158163328.1 | acetyltransferase | - |
| GPY05_RS17760 | 782076..782609 | + | 534 | WP_158163323.1 | DnaJ domain-containing protein | - |
| GPY05_RS17765 | 782747..783100 | + | 354 | WP_158163329.1 | glyoxalase/bleomycin resistance/dioxygenase family protein | - |
| GPY05_RS17770 | 783235..783537 | + | 303 | WP_033837535.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 723256..807124 | 83868 | |
| - | flank | IS/Tn | - | - | 773314..774234 | 920 | |
| - | inside | Integron | - | - | 724419..798658 | 74239 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11045.87 Da Isoelectric Point: 6.8697
>T145018 WP_199246943.1 NZ_CP046826:778584-778871 [Vibrio mimicus]
MKVVWSPLALQKLGDATEFIVFDNPSAAKKWVNEVFDKTELLGSMPEMGRMVPEMPHTTYREIIFGHYRIIYSLGHEIRV
LTVRNCRQLLTEHDV
MKVVWSPLALQKLGDATEFIVFDNPSAAKKWVNEVFDKTELLGSMPEMGRMVPEMPHTTYREIIFGHYRIIYSLGHEIRV
LTVRNCRQLLTEHDV
Download Length: 288 bp
>T145018 NZ_CP062249:4439708-4440058 [Escherichia coli]
ATGGTAAAGAAAAGTGAATTTGAACGGGGAGACATTGTGCTGGTTGGCTTTGATCCAGCAAGCGGCCATGAACAGCAAGG
TGCTGGTCGACCTGCGCTTGTGCTCTCCGTTCAAGCCTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGG
GCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTG
AATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGC
GTTATTACGCTTGCAGGCGGTGGTGGAATAA
ATGGTAAAGAAAAGTGAATTTGAACGGGGAGACATTGTGCTGGTTGGCTTTGATCCAGCAAGCGGCCATGAACAGCAAGG
TGCTGGTCGACCTGCGCTTGTGCTCTCCGTTCAAGCCTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGG
GCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTG
AATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGC
GTTATTACGCTTGCAGGCGGTGGTGGAATAA
Antitoxin
Download Length: 94 a.a. Molecular weight: 10347.90 Da Isoelectric Point: 5.1548
>AT145018 WP_000086650.1 NZ_CP046826:778306-778587 [Vibrio mimicus]
MSRIHLDQDIQPLSEFRAGVASFIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLAAGLGVSN
EDARSQVLGRIIK
MSRIHLDQDIQPLSEFRAGVASFIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLAAGLGVSN
EDARSQVLGRIIK
Download Length: 282 bp
>AT145018 NZ_CP062249:4439463-4439714 [Escherichia coli]
ATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACA
GCCGGGGCAGAGCGTGGAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATG
AACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCACCCCTGCGGGTGAC
GAAATATGGTAA
ATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACA
GCCGGGGCAGAGCGTGGAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATG
AACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCACCCCTGCGGGTGAC
GAAATATGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|