Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 787739..788267 | Replicon | chromosome |
| Accession | NZ_CP046821 | ||
| Organism | Vibrio metschnikovii strain 07-2421 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A0F2IAX4 |
| Locus tag | GPX85_RS03605 | Protein ID | WP_010320326.1 |
| Coordinates | 787739..788026 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | W9V7T8 |
| Locus tag | GPX85_RS03610 | Protein ID | WP_001250181.1 |
| Coordinates | 788016..788267 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX85_RS03570 | 783948..784058 | - | 111 | WP_158137451.1 | DUF3265 domain-containing protein | - |
| GPX85_RS03575 | 784132..784329 | - | 198 | WP_154171045.1 | DUF1289 domain-containing protein | - |
| GPX85_RS03580 | 784530..785459 | - | 930 | WP_158137384.1 | hypothetical protein | - |
| GPX85_RS03585 | 786131..786220 | - | 90 | WP_154170981.1 | hypothetical protein | - |
| GPX85_RS03590 | 786257..786595 | - | 339 | WP_158137385.1 | hypothetical protein | - |
| GPX85_RS03595 | 786640..786750 | - | 111 | WP_094165685.1 | DUF3265 domain-containing protein | - |
| GPX85_RS03600 | 787265..787561 | - | 297 | WP_099610012.1 | antibiotic biosynthesis monooxygenase | - |
| GPX85_RS03605 | 787739..788026 | - | 288 | WP_010320326.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| GPX85_RS03610 | 788016..788267 | - | 252 | WP_001250181.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| GPX85_RS03615 | 788327..788437 | - | 111 | WP_158137386.1 | hypothetical protein | - |
| GPX85_RS03620 | 788560..788832 | + | 273 | WP_004394087.1 | DUF1778 domain-containing protein | - |
| GPX85_RS03625 | 788829..789326 | + | 498 | WP_010319335.1 | GNAT family N-acetyltransferase | - |
| GPX85_RS03630 | 789358..789468 | - | 111 | WP_158137446.1 | DUF3265 domain-containing protein | - |
| GPX85_RS03635 | 790501..791847 | + | 1347 | WP_058799734.1 | group II intron reverse transcriptase/maturase | - |
| GPX85_RS03640 | 792032..792273 | + | 242 | Protein_720 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| GPX85_RS03645 | 792282..792581 | + | 300 | WP_158137387.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GPX85_RS03650 | 792627..792737 | - | 111 | WP_081480741.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 725772..821261 | 95489 | |
| - | inside | Integron | - | katB / cqsA | 3..822451 | 822448 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11038.97 Da Isoelectric Point: 10.5827
>T145010 WP_010320326.1 NZ_CP046821:c788026-787739 [Vibrio metschnikovii]
MTYKLKFLPAAQKEWSKLAPTIQSQFKKKLKERLENPHVPSSKLRGYDSVYKIKLRTAGYRLAYEVIDNEVVVYVLAVGK
RDKDAVYKKLASRFS
MTYKLKFLPAAQKEWSKLAPTIQSQFKKKLKERLENPHVPSSKLRGYDSVYKIKLRTAGYRLAYEVIDNEVVVYVLAVGK
RDKDAVYKKLASRFS
Download Length: 288 bp
>T145010 NZ_CP062249:2772011-2772340 [Escherichia coli]
ATGAACACTCTACCTGCTACAATTTCGCAGGCGGCGAAGCCCTGCCTGTCGCCAGTGGCTGTCTGGCAAATGCTACTGAC
ACGCCTGCTGGAACAACACTATGGCCTGACACTGAACGACACGCCGTTCAGTGATGAAACTGTTATTAAGGAACATATCG
ATGCTGGTATCACTCTGGCCGATGCAGTCAATTTTCTGGTGGAAAAGTACGAACTGGTACGTATCGATCACAGAGGATTT
TCGTGGCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAA
TGTGAAATAA
ATGAACACTCTACCTGCTACAATTTCGCAGGCGGCGAAGCCCTGCCTGTCGCCAGTGGCTGTCTGGCAAATGCTACTGAC
ACGCCTGCTGGAACAACACTATGGCCTGACACTGAACGACACGCCGTTCAGTGATGAAACTGTTATTAAGGAACATATCG
ATGCTGGTATCACTCTGGCCGATGCAGTCAATTTTCTGGTGGAAAAGTACGAACTGGTACGTATCGATCACAGAGGATTT
TCGTGGCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAA
TGTGAAATAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9170.32 Da Isoelectric Point: 4.0197
>AT145010 WP_001250181.1 NZ_CP046821:c788267-788016 [Vibrio metschnikovii]
MRQVLANCSASISELKKNPTALLNEADGSAIAILNHNKPAAYLVPAETYEYLMDMLDDYELSQIVDSRRGDLSQAVEINI
DDL
MRQVLANCSASISELKKNPTALLNEADGSAIAILNHNKPAAYLVPAETYEYLMDMLDDYELSQIVDSRRGDLSQAVEINI
DDL
Download Length: 252 bp
>AT145010 NZ_CP062249:2771673-2771990 [Escherichia coli]
ATGAGCAACACCACATGGGGCCTGCAGCGAGATATCACGCCGCGCCTGGGAGCACGTCTGGTGCAGGAGGGCAACCAGCT
GCACTATCTGGCTGACCGGGCCAGTATCACCGGTAAGTTTAGTGACGCCGAATGTCCTAAGCTGGATGTGGTATTTCCAC
ATTTTATCAGCCAGATAGAGTCGATGCTGACCACTGGTGAACTGAATCCCCGCCATGCCCAATGCGTCACCCTGTACCAC
AACGGTTTTACCTGCGAAGCCGATACTCTTGGTAGTTGCGGCTACGTATACATCGCTGTTTACCCCACTCAACGCTAA
ATGAGCAACACCACATGGGGCCTGCAGCGAGATATCACGCCGCGCCTGGGAGCACGTCTGGTGCAGGAGGGCAACCAGCT
GCACTATCTGGCTGACCGGGCCAGTATCACCGGTAAGTTTAGTGACGCCGAATGTCCTAAGCTGGATGTGGTATTTCCAC
ATTTTATCAGCCAGATAGAGTCGATGCTGACCACTGGTGAACTGAATCCCCGCCATGCCCAATGCGTCACCCTGTACCAC
AACGGTTTTACCTGCGAAGCCGATACTCTTGGTAGTTGCGGCTACGTATACATCGCTGTTTACCCCACTCAACGCTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0F2IAX4 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | W9V7T8 |