Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 1194793..1195352 | Replicon | chromosome |
| Accession | NZ_CP046804 | ||
| Organism | Vibrio cidicii strain 2756-81 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A151JFE6 |
| Locus tag | GPY24_RS11205 | Protein ID | WP_065818737.1 |
| Coordinates | 1195074..1195352 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A0N8UHC9 |
| Locus tag | GPY24_RS11200 | Protein ID | WP_000381185.1 |
| Coordinates | 1194793..1195077 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY24_RS11155 | 1190503..1190592 | - | 90 | WP_081946668.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11160 | 1190636..1190941 | - | 306 | Protein_1043 | DUF4144 domain-containing protein | - |
| GPY24_RS11165 | 1191062..1191934 | - | 873 | WP_065818734.1 | hypothetical protein | - |
| GPY24_RS11175 | 1192110..1192643 | - | 534 | WP_158118630.1 | GNAT family N-acetyltransferase | - |
| GPY24_RS11180 | 1192640..1193041 | - | 402 | WP_084834023.1 | DUF1778 domain-containing protein | - |
| GPY24_RS11185 | 1193134..1193667 | - | 534 | WP_065818735.1 | cysteine hydrolase | - |
| GPY24_RS11190 | 1193699..1193824 | - | 126 | WP_080532886.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11200 | 1194793..1195077 | + | 285 | WP_000381185.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| GPY24_RS11205 | 1195074..1195352 | + | 279 | WP_065818737.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| GPY24_RS11210 | 1195371..1195493 | - | 123 | Protein_1051 | DUF3265 domain-containing protein | - |
| GPY24_RS11215 | 1195490..1195848 | - | 359 | Protein_1052 | VOC family protein | - |
| GPY24_RS11220 | 1196492..1196602 | - | 111 | WP_084834164.1 | DUF3265 domain-containing protein | - |
| GPY24_RS11225 | 1197077..1197829 | - | 753 | WP_065818738.1 | SDR family oxidoreductase | - |
| GPY24_RS22795 | 1198331..1198402 | - | 72 | WP_167520860.1 | hypothetical protein | - |
| GPY24_RS11235 | 1198450..1198797 | - | 348 | WP_158118631.1 | ASCH domain-containing protein | - |
| GPY24_RS11245 | 1199033..1199215 | - | 183 | WP_019829944.1 | DUF645 family protein | - |
| GPY24_RS22800 | 1199384..1199455 | - | 72 | WP_114983889.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 1179870..1203343 | 23473 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10896.60 Da Isoelectric Point: 4.6794
>T144958 WP_065818737.1 NZ_CP046804:1195074-1195352 [Vibrio cidicii]
MIFWEEASLNDREKIFEFLYDFNPAAAEKTDELIETKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVDGSKIRIM
RVLHQKQRFPND
MIFWEEASLNDREKIFEFLYDFNPAAAEKTDELIETKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVDGSKIRIM
RVLHQKQRFPND
Download Length: 279 bp
>T144958 NZ_CP062247:c3035385-3034978 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10887.22 Da Isoelectric Point: 8.0775
>AT144958 WP_000381185.1 NZ_CP046804:1194793-1195077 [Vibrio cidicii]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNQAFEKFDSGKAVFVEHDIAKAR
MAERKAKIRNRGHA
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNQAFEKFDSGKAVFVEHDIAKAR
MAERKAKIRNRGHA
Download Length: 285 bp
>AT144958 NZ_CP062247:c3035632-3035366 [Escherichia coli]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A151JFE6 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0N8UHC9 |