Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 1991084..1991622 | Replicon | chromosome |
| Accession | NZ_CP046791 | ||
| Organism | Vibrio navarrensis strain 2462-79 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | GPY30_RS10125 | Protein ID | WP_158133749.1 |
| Coordinates | 1991323..1991622 (+) | Length | 100 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A0F2HR74 |
| Locus tag | GPY30_RS10120 | Protein ID | WP_011080384.1 |
| Coordinates | 1991084..1991326 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY30_RS10055 | 1986339..1986464 | - | 126 | WP_001973975.1 | DUF3265 domain-containing protein | - |
| GPY30_RS10060 | 1986914..1987369 | - | 456 | WP_158133740.1 | GNAT family N-acetyltransferase | - |
| GPY30_RS10065 | 1987485..1988021 | - | 537 | WP_158133741.1 | GNAT family N-acetyltransferase | - |
| GPY30_RS10070 | 1988059..1988181 | - | 123 | WP_158133742.1 | DUF3265 domain-containing protein | - |
| GPY30_RS10075 | 1988178..1988702 | - | 525 | WP_158133743.1 | GNAT family N-acetyltransferase | - |
| GPY30_RS10080 | 1988729..1988857 | - | 129 | WP_158133744.1 | DUF3265 domain-containing protein | - |
| GPY30_RS10085 | 1988836..1989279 | - | 444 | WP_158133745.1 | hypothetical protein | - |
| GPY30_RS10090 | 1989295..1989429 | - | 135 | WP_158135045.1 | DUF3265 domain-containing protein | - |
| GPY30_RS10095 | 1989413..1989772 | - | 360 | WP_158133746.1 | VOC family protein | - |
| GPY30_RS10100 | 1989785..1989892 | - | 108 | WP_158133747.1 | DUF3265 domain-containing protein | - |
| GPY30_RS10105 | 1989929..1990408 | - | 480 | WP_158133748.1 | hypothetical protein | - |
| GPY30_RS10110 | 1990441..1990566 | - | 126 | Protein_1942 | DUF3265 domain-containing protein | - |
| GPY30_RS10115 | 1990898..1991050 | - | 153 | WP_072612493.1 | DUF3265 domain-containing protein | - |
| GPY30_RS10120 | 1991084..1991326 | + | 243 | WP_011080384.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| GPY30_RS10125 | 1991323..1991622 | + | 300 | WP_158133749.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| GPY30_RS10130 | 1991872..1992132 | - | 261 | WP_158135047.1 | DUF3709 domain-containing protein | - |
| GPY30_RS10135 | 1992126..1992287 | - | 162 | WP_158135049.1 | DUF3709 domain-containing protein | - |
| GPY30_RS10140 | 1992268..1992394 | - | 127 | Protein_1948 | DUF3265 domain-containing protein | - |
| GPY30_RS10145 | 1992728..1992913 | - | 186 | WP_158135051.1 | DUF3265 domain-containing protein | - |
| GPY30_RS10150 | 1992846..1993289 | - | 444 | WP_158133750.1 | GNAT family N-acetyltransferase | - |
| GPY30_RS10155 | 1993440..1993835 | - | 396 | WP_158133751.1 | VOC family protein | - |
| GPY30_RS10160 | 1994335..1994478 | - | 144 | WP_158133752.1 | DUF3265 domain-containing protein | - |
| GPY30_RS10165 | 1994509..1995012 | - | 504 | WP_158133753.1 | hypothetical protein | - |
| GPY30_RS10170 | 1995056..1995181 | - | 126 | Protein_1954 | DUF3265 domain-containing protein | - |
| GPY30_RS10175 | 1995524..1995613 | - | 90 | Protein_1955 | DUF3265 domain-containing protein | - |
| GPY30_RS10180 | 1995635..1995916 | - | 282 | WP_158133754.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | VP1611 / katB | 1589386..2075475 | 486089 | |
| - | inside | Integron | - | - | 1930172..2005096 | 74924 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11717.42 Da Isoelectric Point: 9.9572
>T144946 WP_158133749.1 NZ_CP046791:1991323-1991622 [Vibrio navarrensis]
MRPFQLTNKAKSDLRDIALFTSRRWGREQRNIYLKQFDDSFWLLAENPDIGKACDEIRDGYRKFPQGSHIIFYRQIGSQN
IEIIRILHKSMDVNPIFGA
MRPFQLTNKAKSDLRDIALFTSRRWGREQRNIYLKQFDDSFWLLAENPDIGKACDEIRDGYRKFPQGSHIIFYRQIGSQN
IEIIRILHKSMDVNPIFGA
Download Length: 300 bp
>T144946 NZ_CP062247:c1267004-1266897 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8953.88 Da Isoelectric Point: 4.2213
>AT144946 WP_011080384.1 NZ_CP046791:1991084-1991326 [Vibrio navarrensis]
MAKNTSITLGDHFDGFIANQIQSGRYGSASEVIRSALRLLETQETKMNTLRQLLVEGEESGVADYDLDSFINELDSEERK
MAKNTSITLGDHFDGFIANQIQSGRYGSASEVIRSALRLLETQETKMNTLRQLLVEGEESGVADYDLDSFINELDSEERK
Download Length: 243 bp
>AT144946 NZ_CP062247:1267051-1267117 [Escherichia coli]
TGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
TGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|