Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 1801008..1801546 | Replicon | chromosome |
| Accession | NZ_CP046791 | ||
| Organism | Vibrio navarrensis strain 2462-79 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | A0A3Q0L5T8 |
| Locus tag | GPY30_RS08235 | Protein ID | WP_001247271.1 |
| Coordinates | 1801247..1801546 (+) | Length | 100 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A0F2HR74 |
| Locus tag | GPY30_RS08230 | Protein ID | WP_011080384.1 |
| Coordinates | 1801008..1801250 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY30_RS08180 | 1796295..1796681 | - | 387 | WP_158133579.1 | ASCH domain-containing protein | - |
| GPY30_RS08185 | 1796829..1797181 | - | 353 | Protein_1558 | hypothetical protein | - |
| GPY30_RS08190 | 1797348..1797638 | - | 291 | WP_158133580.1 | antibiotic biosynthesis monooxygenase | - |
| GPY30_RS08195 | 1797683..1798045 | - | 363 | WP_158133581.1 | MerR family transcriptional regulator | - |
| GPY30_RS08200 | 1798195..1798656 | - | 462 | WP_158133582.1 | hypothetical protein | - |
| GPY30_RS08205 | 1798780..1799196 | - | 417 | WP_158133583.1 | GNAT family N-acetyltransferase | - |
| GPY30_RS08210 | 1799222..1799311 | - | 90 | Protein_1563 | DUF3265 domain-containing protein | - |
| GPY30_RS08215 | 1799679..1799837 | - | 159 | WP_158133584.1 | DUF3265 domain-containing protein | - |
| GPY30_RS08220 | 1799821..1800333 | - | 513 | WP_158133585.1 | GNAT family N-acetyltransferase | - |
| GPY30_RS08225 | 1800361..1800471 | - | 111 | WP_114762986.1 | DUF3265 domain-containing protein | - |
| GPY30_RS08230 | 1801008..1801250 | + | 243 | WP_011080384.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| GPY30_RS08235 | 1801247..1801546 | + | 300 | WP_001247271.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| GPY30_RS08240 | 1802487..1802618 | - | 132 | WP_158134951.1 | DUF3265 domain-containing protein | - |
| GPY30_RS08245 | 1803026..1803118 | - | 93 | WP_011105961.1 | hypothetical protein | - |
| GPY30_RS08250 | 1804602..1804694 | - | 93 | WP_080368416.1 | DUF3265 domain-containing protein | - |
| GPY30_RS08255 | 1804721..1805059 | - | 339 | WP_000196674.1 | hypothetical protein | - |
| GPY30_RS08260 | 1805069..1805194 | - | 126 | WP_158133586.1 | DUF3265 domain-containing protein | - |
| GPY30_RS08265 | 1805536..1805658 | - | 123 | WP_158134953.1 | DUF3265 domain-containing protein | - |
| GPY30_RS08270 | 1806121..1806345 | - | 225 | WP_158133587.1 | methionyl-tRNA formyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | VP1611 / katB | 1589386..2075475 | 486089 | |
| - | inside | Integron | - | - | 1759479..1890842 | 131363 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11703.39 Da Isoelectric Point: 9.9572
>T144942 WP_001247271.1 NZ_CP046791:1801247-1801546 [Vibrio navarrensis]
MRPFQLTNKAKSDLRDIALFTSRRWGREQRNIYLKQFDDSFWLLAENPDIGKACDEIRDGYRKFPQGSHVIFYRQIGSQN
IEIIRILHKSMDVNPIFGA
MRPFQLTNKAKSDLRDIALFTSRRWGREQRNIYLKQFDDSFWLLAENPDIGKACDEIRDGYRKFPQGSHVIFYRQIGSQN
IEIIRILHKSMDVNPIFGA
Download Length: 300 bp
>T144942 NZ_CP062247:c259380-259039 [Escherichia coli]
ATGAAAACTTTACCTGCAATAACTCAGCGGGCGGTGAAGCCCTGCCTGTCACCCGTGGCTGTCTGGCAAATGTTACTGAC
ACGTCTGCTGGAACAGCACTATGGTCTGACAATAAACGACACGCCATTCTGCAATGAGGCTGTGATTAAGGAACACATCG
ATGCCGGTATCACCCTAGCCGATGCCGTGAATTTTCTGGTAGAAAAATACGAGCTGGTTCGTATCGACAGGAAGGGATTT
AGCTGGCAGGAACAATCTCCTTATCTCCGGGCTGCAGACATTCTGCGAGCGCGGCAGGCAACTGGCTTGTTGCGGCAAAG
CCGTAACAACGTAGTACGATGA
ATGAAAACTTTACCTGCAATAACTCAGCGGGCGGTGAAGCCCTGCCTGTCACCCGTGGCTGTCTGGCAAATGTTACTGAC
ACGTCTGCTGGAACAGCACTATGGTCTGACAATAAACGACACGCCATTCTGCAATGAGGCTGTGATTAAGGAACACATCG
ATGCCGGTATCACCCTAGCCGATGCCGTGAATTTTCTGGTAGAAAAATACGAGCTGGTTCGTATCGACAGGAAGGGATTT
AGCTGGCAGGAACAATCTCCTTATCTCCGGGCTGCAGACATTCTGCGAGCGCGGCAGGCAACTGGCTTGTTGCGGCAAAG
CCGTAACAACGTAGTACGATGA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8953.88 Da Isoelectric Point: 4.2213
>AT144942 WP_011080384.1 NZ_CP046791:1801008-1801250 [Vibrio navarrensis]
MAKNTSITLGDHFDGFIANQIQSGRYGSASEVIRSALRLLETQETKMNTLRQLLVEGEESGVADYDLDSFINELDSEERK
MAKNTSITLGDHFDGFIANQIQSGRYGSASEVIRSALRLLETQETKMNTLRQLLVEGEESGVADYDLDSFINELDSEERK
Download Length: 243 bp
>AT144942 NZ_CP062247:c259718-259401 [Escherichia coli]
ATGAGCAACCCTACCAGGGGCCTGCAGCGGGAGATTACACTGCGCCTGGGAGCCCGTCTGGTGCAGGAAGGCAACCGACT
GCATTATCTGGCTGACCGGGCCAGCATCACCGGCAAGTTCAGTGACATCGAATGCCGGAAGCTGGATGAAACATTCCCGC
ACTTTATCCTCCAGATGGAATCGATGCTGACCACCGGTGAACTCAGCCCCCACCATGCCCACTGCGTTACCCTGTACCAC
AACGATTTAACCTGCGAAGCCGACACCCTTGGCAGTTGCGGCTACGTATACATCGCCATTTACCCCACTCAGCGTTAA
ATGAGCAACCCTACCAGGGGCCTGCAGCGGGAGATTACACTGCGCCTGGGAGCCCGTCTGGTGCAGGAAGGCAACCGACT
GCATTATCTGGCTGACCGGGCCAGCATCACCGGCAAGTTCAGTGACATCGAATGCCGGAAGCTGGATGAAACATTCCCGC
ACTTTATCCTCCAGATGGAATCGATGCTGACCACCGGTGAACTCAGCCCCCACCATGCCCACTGCGTTACCCTGTACCAC
AACGATTTAACCTGCGAAGCCGACACCCTTGGCAGTTGCGGCTACGTATACATCGCCATTTACCCCACTCAGCGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A3Q0L5T8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0F2HR74 |