Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hipBA/HipA-couple_hipB |
| Location | 807716..809550 | Replicon | chromosome |
| Accession | NZ_CP046791 | ||
| Organism | Vibrio navarrensis strain 2462-79 | ||
Toxin (Protein)
| Gene name | hipA | Uniprot ID | - |
| Locus tag | GPY30_RS03600 | Protein ID | WP_158133142.1 |
| Coordinates | 808180..809550 (-) | Length | 457 a.a. |
Antitoxin (Protein)
| Gene name | hipB | Uniprot ID | - |
| Locus tag | GPY30_RS03595 | Protein ID | WP_158133141.1 |
| Coordinates | 807716..808195 (-) | Length | 160 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY30_RS03565 | 802990..803580 | - | 591 | WP_052072623.1 | DedA family protein | - |
| GPY30_RS03570 | 803880..804842 | - | 963 | WP_158133138.1 | threonylcarbamoyl-AMP synthase | - |
| GPY30_RS03575 | 805116..805340 | + | 225 | WP_039434078.1 | hypothetical protein | - |
| GPY30_RS03580 | 805396..805875 | - | 480 | WP_039424332.1 | MarR family transcriptional regulator | - |
| GPY30_RS03585 | 805996..806895 | + | 900 | WP_158133139.1 | EamA family transporter | - |
| GPY30_RS03590 | 806897..807490 | + | 594 | WP_158133140.1 | NAD(P)H-dependent oxidoreductase | - |
| GPY30_RS03595 | 807716..808195 | - | 480 | WP_158133141.1 | helix-turn-helix domain-containing protein | Antitoxin |
| GPY30_RS03600 | 808180..809550 | - | 1371 | WP_158133142.1 | type II toxin-antitoxin system HipA family toxin | Toxin |
| GPY30_RS03605 | 810192..811562 | + | 1371 | WP_158133143.1 | Fic family protein | - |
| GPY30_RS03610 | 811756..812004 | + | 249 | WP_095456986.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| GPY30_RS03615 | 811994..812284 | + | 291 | WP_158133144.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GPY30_RS03620 | 812346..812573 | + | 228 | WP_158133145.1 | AlpA family transcriptional regulator | - |
| GPY30_RS03625 | 812606..813562 | - | 957 | Protein_679 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 457 a.a. Molecular weight: 51481.40 Da Isoelectric Point: 5.1285
>T144938 WP_158133142.1 NZ_CP046791:c809550-808180 [Vibrio navarrensis]
VLSMEALTVQAFIRGEWIDIGIISFPKSSQHNFRVTELNYLSDYALEHHDKDDFHAVSLNHPVSFFFDDMGKPGWLKFLD
DLMPSGASRRYWVKHLDIEDLSSDEQDYVLLKFGTMSPIGNLRIKDSLPERYEVADNLYFSVDDVKNRAGDFLDYAQQRG
AAAGGATGAGGEAPKLILRCGFDHGSGSEKIWIDPYQDDNSNHDLHYLVKYPRGSKSTIDCNILRAEFYFYHELTEMGVE
TISTDGMRLEEGLNYPSLWLPRFDVQITNQQIERFGMESVYSILNKGAGVTLDHETTIRTLIEKITESNMVKHQGYRFDT
QAFVIEWVKRDLLNILFGNSDNHGRNTSFLKGDGVIKLAPIYDFAPMKADPEGIPRTTKWKAPLEVGGTYDFVGIADTLS
DLVPKEVLLKELAITASKCVGLKQRLALRGVPEQILEMPAVGLNHISEKLTKWGLL
VLSMEALTVQAFIRGEWIDIGIISFPKSSQHNFRVTELNYLSDYALEHHDKDDFHAVSLNHPVSFFFDDMGKPGWLKFLD
DLMPSGASRRYWVKHLDIEDLSSDEQDYVLLKFGTMSPIGNLRIKDSLPERYEVADNLYFSVDDVKNRAGDFLDYAQQRG
AAAGGATGAGGEAPKLILRCGFDHGSGSEKIWIDPYQDDNSNHDLHYLVKYPRGSKSTIDCNILRAEFYFYHELTEMGVE
TISTDGMRLEEGLNYPSLWLPRFDVQITNQQIERFGMESVYSILNKGAGVTLDHETTIRTLIEKITESNMVKHQGYRFDT
QAFVIEWVKRDLLNILFGNSDNHGRNTSFLKGDGVIKLAPIYDFAPMKADPEGIPRTTKWKAPLEVGGTYDFVGIADTLS
DLVPKEVLLKELAITASKCVGLKQRLALRGVPEQILEMPAVGLNHISEKLTKWGLL
Download Length: 1371 bp
>T144938 NZ_CP062246:c4523870-4523613 [Escherichia coli]
ATGAATTTATCCCGTCAGGAACAACATACCTTACACGTTCTCGCTAAAGGTAGACGTATTGCGCACGTCCGCGATTCTTC
AGGCCGCGTCACTTCCGTTGAATGCTACAGCCGCGAAGGGCTGTTGCTGACCGACTGCACGCTCGCCGTCTTCAAAAAAC
TCAAAACCAAAAAACTTATCAAGTCCGTCAATGGCCAGCCCTATCGAATCAACACCACCGAGCTGAATAAAGTTCGCGCT
CAGCTCGATAATCGCTAA
ATGAATTTATCCCGTCAGGAACAACATACCTTACACGTTCTCGCTAAAGGTAGACGTATTGCGCACGTCCGCGATTCTTC
AGGCCGCGTCACTTCCGTTGAATGCTACAGCCGCGAAGGGCTGTTGCTGACCGACTGCACGCTCGCCGTCTTCAAAAAAC
TCAAAACCAAAAAACTTATCAAGTCCGTCAATGGCCAGCCCTATCGAATCAACACCACCGAGCTGAATAAAGTTCGCGCT
CAGCTCGATAATCGCTAA
Antitoxin
Download Length: 160 a.a. Molecular weight: 17517.06 Da Isoelectric Point: 10.6534
>AT144938 WP_158133141.1 NZ_CP046791:c808195-807716 [Vibrio navarrensis]
MGATMKPSNRESVQDTVARLRANRNQQQPKVGKNATHSIKEQTQLDTPTRSKASKNAKAVSAAERKTEANKIIKHLLLGE
LTQGQALKSLRINILGLKQDVFARLVDVSRKTLSDIENDRGSYNTEILNKVFKPFGLKVGLLPSSPDALKSLLIDDEAE
MGATMKPSNRESVQDTVARLRANRNQQQPKVGKNATHSIKEQTQLDTPTRSKASKNAKAVSAAERKTEANKIIKHLLLGE
LTQGQALKSLRINILGLKQDVFARLVDVSRKTLSDIENDRGSYNTEILNKVFKPFGLKVGLLPSSPDALKSLLIDDEAE
Download Length: 480 bp
>AT144938 NZ_CP062246:c4523601-4523056 [Escherichia coli]
ATGACAGTACACCACTTCACTTTTCATATCACAGATAAAAGTGATGCCAGTGATATCCGGGAAGTCGAAACCCGCGCATT
TGGCTTCAGCAAAGAAGCCGATTTAGTGGCCTCTTTACTTGAGGATGAAAGCGCGCGCCCCGCGTTATCGCTGCTAGCCC
GGTATGAAGGCAAAGCCGTCGGGCATATTTTATTTACCCGGGCAACCTTCAAAGGAGAAATGGATTCACCGTTGATGCAC
ATCCTCGCTCCCCTGGCGGTCATACCGGAATACCAAGGGATGGGCGTGGGAGGACGGTTGATACGCACTGGCATCGAGCA
CCTGAGGTTGATGGGCTGCCAGACGGTTTTTGTTCTCGGCCACGCCACCTATTACCCCCGACATGGGTTCGAACCCTGTG
CCGGAGACAAAGGCTATCCGGCACCTTATCCCATCCCGGAGGAGCACAAAGCCTGCTGGATGATGCAATCACTCACCGCT
CAGCCCATGACCCTGACCGGCCACATCCGGTGCGCAGACCCTGATGAAACCGGAGCACTGACGTGA
ATGACAGTACACCACTTCACTTTTCATATCACAGATAAAAGTGATGCCAGTGATATCCGGGAAGTCGAAACCCGCGCATT
TGGCTTCAGCAAAGAAGCCGATTTAGTGGCCTCTTTACTTGAGGATGAAAGCGCGCGCCCCGCGTTATCGCTGCTAGCCC
GGTATGAAGGCAAAGCCGTCGGGCATATTTTATTTACCCGGGCAACCTTCAAAGGAGAAATGGATTCACCGTTGATGCAC
ATCCTCGCTCCCCTGGCGGTCATACCGGAATACCAAGGGATGGGCGTGGGAGGACGGTTGATACGCACTGGCATCGAGCA
CCTGAGGTTGATGGGCTGCCAGACGGTTTTTGTTCTCGGCCACGCCACCTATTACCCCCGACATGGGTTCGAACCCTGTG
CCGGAGACAAAGGCTATCCGGCACCTTATCCCATCCCGGAGGAGCACAAAGCCTGCTGGATGATGCAATCACTCACCGCT
CAGCCCATGACCCTGACCGGCCACATCCGGTGCGCAGACCCTGATGAAACCGGAGCACTGACGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|