Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/Phd(antitoxin) |
| Location | 3100024..3100571 | Replicon | chromosome |
| Accession | NZ_CP046778 | ||
| Organism | Vibrio parahaemolyticus strain 2014V-1125 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A249W5B6 |
| Locus tag | GPY34_RS24285 | Protein ID | WP_005500333.1 |
| Coordinates | 3100269..3100571 (+) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | U3A269 |
| Locus tag | GPY34_RS24280 | Protein ID | WP_005448240.1 |
| Coordinates | 3100024..3100281 (+) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY34_RS24205 | 3095353..3095445 | + | 93 | WP_193268598.1 | DUF3265 domain-containing protein | - |
| GPY34_RS24210 | 3095490..3095774 | + | 285 | WP_005500325.1 | nucleotide pyrophosphohydrolase | - |
| GPY34_RS24215 | 3095782..3095892 | + | 111 | WP_082798391.1 | DUF3265 domain-containing protein | - |
| GPY34_RS24220 | 3095919..3096191 | + | 273 | WP_005462157.1 | nicotinamide mononucleotide transporter | - |
| GPY34_RS24225 | 3096223..3096312 | + | 90 | WP_079748734.1 | DUF3265 domain-containing protein | - |
| GPY34_RS24230 | 3096343..3096639 | + | 297 | WP_005500327.1 | hypothetical protein | - |
| GPY34_RS24235 | 3096579..3096746 | + | 168 | WP_086027883.1 | DUF3265 domain-containing protein | - |
| GPY34_RS24240 | 3096776..3097156 | + | 381 | WP_005487927.1 | TonB family protein | - |
| GPY34_RS24245 | 3097163..3097273 | + | 111 | WP_079861117.1 | DUF3265 domain-containing protein | - |
| GPY34_RS24250 | 3097283..3097792 | + | 510 | WP_005500328.1 | hypothetical protein | - |
| GPY34_RS24255 | 3097807..3097899 | + | 93 | WP_005500330.1 | DUF3265 domain-containing protein | - |
| GPY34_RS24260 | 3097925..3098362 | + | 438 | WP_005500331.1 | GIY-YIG nuclease family protein | - |
| GPY34_RS24265 | 3099069..3099266 | + | 198 | WP_005500332.1 | hypothetical protein | - |
| GPY34_RS24275 | 3099874..3099942 | + | 69 | WP_079748735.1 | DUF3265 domain-containing protein | - |
| GPY34_RS24280 | 3100024..3100281 | + | 258 | WP_005448240.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| GPY34_RS24285 | 3100269..3100571 | + | 303 | WP_005500333.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| GPY34_RS24290 | 3100610..3100699 | + | 90 | WP_072828861.1 | DUF3265 domain-containing protein | - |
| GPY34_RS24295 | 3100747..3101115 | + | 369 | WP_005500334.1 | VOC family protein | - |
| GPY34_RS24300 | 3101272..3102111 | + | 840 | WP_005500335.1 | hypothetical protein | - |
| GPY34_RS24305 | 3102260..3102613 | + | 354 | WP_005500336.1 | glyoxalase/bleomycin resistance/dioxygenase family protein | - |
| GPY34_RS25425 | 3102574..3102708 | + | 135 | WP_161612893.1 | DUF3265 domain-containing protein | - |
| GPY34_RS24315 | 3102737..3103015 | - | 279 | WP_005500338.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| GPY34_RS24320 | 3103012..3103296 | - | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| GPY34_RS24325 | 3103563..3103853 | + | 291 | WP_005500341.1 | YkgJ family cysteine cluster protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 3004811..3106888 | 102077 | |
| - | inside | Integron | - | - | 3005335..3106207 | 100872 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11682.65 Da Isoelectric Point: 6.9806
>T144926 WP_005500333.1 NZ_CP046778:3100269-3100571 [Vibrio parahaemolyticus]
MAEIIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLQTFPKSGRIPPELEHLSYREVVVNPCRIFYKQDGDKV
FILFVMRAERDLRKFLLSKQ
MAEIIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLQTFPKSGRIPPELEHLSYREVVVNPCRIFYKQDGDKV
FILFVMRAERDLRKFLLSKQ
Download Length: 303 bp
>T144926 NZ_CP062246:c2082946-2082692 [Escherichia coli]
GTGAAACTAATCTGGTCTGAGGAATCATGGGACGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
GTGAAACTAATCTGGTCTGAGGAATCATGGGACGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9606.10 Da Isoelectric Point: 6.7269
>AT144926 WP_005448240.1 NZ_CP046778:3100024-3100281 [Vibrio parahaemolyticus]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
Download Length: 258 bp
>AT144926 NZ_CP062246:c2083194-2082943 [Escherichia coli]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGCTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATCATTGAGTGA
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGCTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATCATTGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A249W5B6 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A432DGX8 |